Then I am not doing the question propperly, and I obviously did not
understand the basis of tksurfer :)
I am going to work in Matlab, and I just wanted to use the output of
Freesurfer to help me with my algorithm, so I am not going to use neither
tkmedit nor tksurfer. Hence, I do not exactly need
Hi Fidel
the surfaces of the same hemi for a given subject area all topologically
equivalent and share an index structure. what that means is that the
vertex label/annotation can be shown/used on any surface, including the
?h.white and ?h.pial surfaces (which is probably what you want). Or you
Thanks mr Fischl, but these surfaces are a deformation of the original
brain (According to what I have read in the wiki). My intention is to
write an algorithm to do some operations on the original images, using the
sulci information from freesurfer. In order to do that, I would need the
sulci info
the gyral/sulcal segmentations are generated on the surfaces and viewable
in tksurfer. For example:
tksurfer lh inflated -aparc
will bring up and show the lh.aparc.annot on top of the inflated
surface. You can also load them from the tksurfer interface using
file->label->import annotation
c
Hi,
I am pretty new in freesurfer and I do not know if this question has been
answered before (It is difficult to search for 1 basic question), so I
will post it anyways:
- Is there any segmentation/labeling in freesurfer that allows the user to
identify all the sulci of an MR image? I have done
