: Freesurfer support list
Subject: Re: [Freesurfer] Sulcal probability maps
mris_spherical_average will use the surface-based registration (?h.sphere.reg)
to map the labels to whatever your output subject is and do the averaging in
that space. You can specify fsaverage by -o fsaverage on the
than draw the labels on the natives surface prior to running it
cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Kristi Drudik
Sent: Friday, February 26, 2021 4:20 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Sulcal probability maps
External Email
: [Freesurfer] Sulcal probability maps
Oh yes, that is your problem. mris_spherical_average assumes they are in
subject space
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
On Behalf Of Kristi
Oh yes, that is your problem. mris_spherical_average assumes they are in
subject space
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Kristi Drudik
Sent: Friday, February 26, 2021 2:52 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Sulcal probability maps
Can you load the label onto that subject also?
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Kristi Drudik
Sent: Friday, February 26, 2021 2:37 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Sulcal probability maps
External Email - Use Caution
External
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Kristi Drudik
Sent: Friday, February 26, 2021 12:22 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Sulcal probability maps
External Email - Use Caution
External Email - Use Cautio
of Kristi Drudik
Sent: Friday, February 26, 2021 11:02 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] Sulcal probability maps
External Email - Use Caution
External Email - Use Caution
Hi Bruce,
Thank you for your reply! What is the difference between and
. I’m
: Freesurfer support list
Subject: Re: [Freesurfer] Sulcal probability maps
Sorry, it doesn’t have the greatest help 😊
mris_spherical_average
usage: mris_spherical_average [option]
...
where which is one of
coords
label
vals
curv
area
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Kristi Drudik
Sent: Thursday, February 25, 2021 9:59 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] Sulcal probability maps
External Email - Use Caution
External Email - Use Caution
Hi Bruce,
Thank you for your
d.edu
On Behalf Of Fischl, Bruce
Sent: February 23, 2021 8:09 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Sulcal probability maps
Did you try mris_spherical_average? I have definitely used it for this (among
other things). I assume you saved the sulcal labels to a .label file?
C
support list
Subject: Re: [Freesurfer] Sulcal probability maps
External Email - Use Caution
Hi Doug,
That's exactly what I mean. We are drawing them directly on FreeView by
creating a closed path on the white surface and filling it (see attachment for
reference).
Best,
Kristi
*From:*freesurfer-boun...@nmr.mgh.harvard.edu
*On Behalf Of *Douglas N. Greve
*Sent:* February 19, 2021 10:16 AM
*To:* freesurfer@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] Sulcal probability maps
What format is your sulcus in?
On 2/16/2021 2:38 PM, Kristi Drudik wrote:
*External
r-boun...@nmr.mgh.harvard.edu>>
On Behalf Of Douglas N. Greve
Sent: February 19, 2021 10:16 AM
To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Sulcal probability maps
What format is your sulcus in?
On 2/16/2021 2:38 PM, Kristi Drudik wrote:
@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Sulcal probability maps
What format is your sulcus in?
On 2/16/2021 2:38 PM, Kristi Drudik wrote:
External Email - Use Caution
Good afternoon,
I hope this email finds you well.
I am in the process of "painting" MRI surfaces from
What format is your sulcus in?
On 2/16/2021 2:38 PM, Kristi Drudik wrote:
External Email - Use Caution
Good afternoon,
I hope this email finds you well.
I am in the process of “painting” MRI surfaces from the Human
connectome project in FreeSurfer, meaning creating labels on the
su
15 matches
Mail list logo
