Re: [Freesurfer] Subdividing the automated cortical parcellation/normalization

2009-01-21 Thread Bruce Fischl
Hi Diana, I wonder whether dividing the parcellations is really what you want. It would be pretty easy to put together a parcellation that is uniform in spherical coordinates across subjects, so you get essentially a uniform triangular tiling of each subject's brain. Would that be more useful

Re: [Freesurfer] Subdividing the automated cortical parcellation/normalization

2009-01-21 Thread Diana Wotruba
This worked perfectly well, thanks a lot for your quick answer! I would appreciate to get some input for the following issue. I run the mris_divide_parcellation on the fsaverage brain getting about 1000 parcellations: mris_divide_parcellation fsaverage_fineparc rh aparc.a2005s_150.annot 150 rh_

Re: [Freesurfer] Subdividing the automated cortical parcellation

2009-01-16 Thread Douglas N Greve
Try mris_divide_parcellation Diana Wotruba wrote: Dear experts Using cortical thickness analysis with Freesurfer I would like to compute small world network indices in a special population. The automated parcellating system is resulting in 66 cortical areas. For our purpose, I would like to

Re: [Freesurfer] Subdividing the automated cortical parcellation

2009-01-16 Thread Bruce Fischl
Hi Diana, you can try mris_divide_parcellation, which I think we distribute. If you don't have it tell us your os/hardware and we'll send you a version. cheers, Bruce On Fri, 16 Jan 2009, Diana Wotruba wrote: Dear experts Using cortical thickness analysis with Freesurfer I would like to

[Freesurfer] Subdividing the automated cortical parcellation

2009-01-16 Thread Diana Wotruba
Dear experts Using cortical thickness analysis with Freesurfer I would like to compute small world network indices in a special population. The automated parcellating system is resulting in 66 cortical areas. For our purpose, I would like to subdivide these areas into smaller ones. (A similar