Re: [Freesurfer] Stats per region to brain map

2017-02-17 Thread Johannes Klene
Ah, scale x100 (not -0.1 to 0.5 but -10 to 50). I'm embarrassed I didn't notice this earlier, All solved and works beautifully, thank you very very much! 2017-02-17 18:21 GMT+01:00 Douglas N Greve : > When you click on the different areas, is the value displayed in the > control window correct?

Re: [Freesurfer] Stats per region to brain map

2017-02-17 Thread Douglas N Greve
When you click on the different areas, is the value displayed in the control window correct? On 02/17/2017 09:55 AM, Johannes Klene wrote: > Dear dr. Greve, > thank you, this looks exactly like what I need. I have created the mgh > file as suggested in the matlab script, with my stats values >

Re: [Freesurfer] Stats per region to brain map

2017-02-17 Thread Johannes Klene
Dear dr. Greve, thank you, this looks exactly like what I need. I have created the mgh file as suggested in the matlab script, with my stats values (correlations, ranging from -0.1 to ~0.5) as 'annotvals'. After updating to FS6.0 i also managed to get the tksurferfv command to run (tksurferfv fsave

Re: [Freesurfer] Stats per region to brain map

2017-02-16 Thread Douglas N Greve
Try annotval2surfoverlay.m (it is in v6; if you using another version, I can get you the file) On 02/15/2017 05:43 AM, Johannes Klene wrote: > Hi! > I've been reading up on tkviewer etc. but can't figure out how to > accomplish the following: > I calculated some stats (outside Freesurfer) summa

[Freesurfer] Stats per region to brain map

2017-02-15 Thread Johannes Klene
Hi! I've been reading up on tkviewer etc. but can't figure out how to accomplish the following: I calculated some stats (outside Freesurfer) summarizing the relation between cortical thickness and my outcome measure, per region present in the Killiany/Desikan atlas (i.e. running analyses on data ob