When you click on the different areas, is the value displayed in the control window correct?
On 02/17/2017 09:55 AM, Johannes Klene wrote: > Dear dr. Greve, > thank you, this looks exactly like what I need. I have created the mgh > file as suggested in the matlab script, with my stats values > (correlations, ranging from -0.1 to ~0.5) as 'annotvals'. After > updating to FS6.0 i also managed to get the tksurferfv command to run > (tksurferfv fsaverage lh inflated -aparc -ov vals.mgh -fminmax .01 > 1). However, the viewer only shows a uniformly yellow inflated > surface (lh.inflated loaded); I think I actually see the correct map > for a very brief moment while the viewer is loading. I've tried > playing around with the settings but nothing appears to work. Could > you help me one more time, with pointing towards the right settings > for the viewer in my situation? > Thank you very much. Kind regards, Johannes > > 2017-02-16 20:07 GMT+01:00 Douglas N Greve <gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>>: > > Try annotval2surfoverlay.m (it is in v6; if you using another > version, I > can get you the file) > > > On 02/15/2017 05:43 AM, Johannes Klene wrote: > > Hi! > > I've been reading up on tkviewer etc. but can't figure out how to > > accomplish the following: > > I calculated some stats (outside Freesurfer) summarizing the > relation > > between cortical thickness and my outcome measure, per region > present > > in the Killiany/Desikan atlas (i.e. running analyses on data > obtained > > from aparcstats2table). Now I'd like to visualize these results, one > > number per region, by projecting them on the standard brain such > that > > regions that showed a stronger association are more yellow and > regions > > with weaker association are more red. Is there a straightforward way > > of doing this? I was thinking of maybe adjusting the RGB values in > > FreeSurferColorLUT.txt file? > > I'd be very grateful if anyone can provide some tips how to handle > > this. Kind regards, Johannes > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 <tel:617-724-2358> > Fax: 617-726-7422 <tel:617-726-7422> > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > <https://gate.nmr.mgh.harvard.edu/filedrop2> > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > Outgoing: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > The information in this e-mail is intended only for the person to > whom it is > addressed. If you believe this e-mail was sent to you in error and > the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline > <http://www.partners.org/complianceline> . If the e-mail was sent > to you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
