Hi Harriet
it's tough to diagnose from just this, but that is pretty bad! Can you give
us some details about the editing? Or tar/gzip the whole subject dir and
upload it and we will take a look
cheers
Bruce
On Tue, 24 Mar 2020, Harriet Cornwell
wrote:
External Email - Use Cautio
External Email - Use Caution
Hello,
We are using FreeSurfer v5.3. and are sometimes finding that a brain can seem
okay when it is first run through the recon-all process and is edited, but then
when it is re-run the segmentation seems to deteriorate hugely. I have
screenshotted
Dear Bruce,
Thanks a lot for clarifying.
Best wishes,
Barbara
On 06/07/2016 15:57, Bruce Fischl wrote:
> Hi Barbara
>
> yes, this is intentional and shouldn't be a problem. The hippocampus has
> lots of internal structure that we don't model with the surfaces (but we do
> with the subfield stu
Hi Barbara
yes, this is intentional and shouldn't be a problem. The hippocampus has
lots of internal structure that we don't model with the surfaces (but we do
with the subfield stuff), but we exclude it from our analyses so you should
be fine
cheers
Bruce
On Wed, 6 Jul 2016, Barbara Kreilkam
Hi,
There is nothing to solve — that is the expected behavior around the
hippocampus/amygdala.
See this FAQ:
https://surfer.nmr.mgh.harvard.edu/fswiki/UserContributions/FAQ#Q.Thesurfac
esnearthemedialwall.2Chippocampus.2Candamygdalaaren.27taccuratelyfollowingt
hestructuresthere.HowcanIfixthis.3F
