Re: [Freesurfer] Saving subjects

2013-06-06 Thread Garikoitz Lerma-Usabiaga
Thanks Bruce, yes, the problem was that the box wasn't set up properly and we lost several subjects because of that (head cut at the top). I'll just try with the control points then, thanks! Gari On Thu, Jun 6, 2013 at 3:23 PM, Bruce Fischl wrote: > Hi Gari > > I took a quick look at the image

Re: [Freesurfer] Saving subjects

2013-06-06 Thread Bruce Fischl
Hi Gari I took a quick look at the images and the surfaces look reasonable. What are the problems you are having? There's a lot of dropoff at the vertex in the data, probably because of your coil geometry. Is this the problem you are referring to, that superior wm/gm is not captured by the sur