Thanks Bruce, yes, the problem was that the box wasn't set up properly and we lost several subjects because of that (head cut at the top).
I'll just try with the control points then, thanks! Gari On Thu, Jun 6, 2013 at 3:23 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>wrote: > Hi Gari > > I took a quick look at the images and the surfaces look reasonable. What > are the problems you are having? There's a lot of dropoff at the vertex in > the data, probably because of your coil geometry. Is this the problem you > are referring to, that superior wm/gm is not captured by the surfaces? A > couple of control points in the WM up there should help a lot. > > cheers > Bruce > > > On Thu, 6 Jun 2013, Garikoitz Lerma-Usabiaga wrote: > > Hi list,we have some subjects with acquisition problems. >> >> >> Do you think it is possible to save this two subjects, and if so, how? >> >> They have been run with: >> recon-all -i (file) -s (subject) -qcache -hippo-subfields -all >> >> They have been acquired with 3T, MPRAGE (but I didn't add the flags). >> I've read in the list about -washu-mprage , but I don't know how to use, >> couldn't find the documentation. >> >> Should it be enough adding wm control points? >> >> >> Many thanks in advance! >> Gari >> >> (sorry to post that many images, they belong to only two different >> subjects) >> >> Inline image 5 Inline image 4 Inline image 3 Inline image 2 Inline image 1 >> >> >> > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. > If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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