Re: [Freesurfer] Sag3D_T1 or Axial_T1

2011-10-31 Thread Douglas N Greve
In general, the software packages don't really care how the data were acquired (though FSL generally wants images that are in radiological convention -- check their web site). You do want to make sure that all your subjects were acquired in the same way (ie, don't acquire some subjects axially

[Freesurfer] Sag3D_T1 or Axial_T1

2011-10-31 Thread Antonella Kis
Dear Freesurfers, I have a set of MRI data collected in an Axial_T1 and some in Sag3D_T1. I wonder if after dcm to nii conversion when I get a 3D or 4D volume (if further use for FSL) it really matter how my data was acquired (Axial or Sag) since the NIFTI file is in fact a volume. Should I d

[Freesurfer] Sag3D_T1 or Axial_T1

2011-10-28 Thread Antonella Kis
Dear Freesurfers, I have a set of MRI data collected in an Axial_T1 and some in Sag3D_T1. I wonder if after dcm to nii conversion when I get a 3D or 4D volume (if further use for FSL) it really matter how my data was acquired (Axial or Sag) since the NIFTI file is in fact a volume. Should I do