Dear Freesurfers,
I have a set of MRI data collected in an Axial_T1 and some in Sag3D_T1. I
wonder if after dcm to nii conversion when I get a 3D or 4D volume (if further
use for FSL) it really matter how my data was acquired (Axial or Sag) since the
NIFTI file is in fact a volume. Should I do a conversion for all the files in
Axial or Sag? I am planning to use this data in Qdec and also in FSL to do some
DTI studies, so I will need to register this data into MNI space. Also, how I
can cut from the nii file's slices in order to bring two files to the same
dimensions (x, Y, Z)?
Many thanks,
Antonella
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