Re: [Freesurfer] SAMSEG seg output contains holes

2021-08-02 Thread Koen Van Leemput
External Email - Use Caution Hi Simon, This could be an issue with the affine registration or the subsequent head masking step in samseg, both of which have been upgraded/improved in the development version. Would you be able to try the dev version and see if this resolves the is

[Freesurfer] SAMSEG seg output contains holes

2021-07-30 Thread Simon Jones
External Email - Use Caution Dear all I have tried using SAMSEG in 7.1.1 with 7T MP2RAGE sequence data which has an inv1, inv2 and a uni images and I can create a denoised image which has a more of a traditional T1-weighted appearance. I have got some good looking results combi