Re: [Freesurfer] Running Tracula -bedpostx and -path

2012-04-24 Thread Richard Binney
Thanks - appears as if all is well. On Tue, Apr 24, 2012 at 4:02 PM, Anastasia Yendiki < ayend...@nmr.mgh.harvard.edu> wrote: > > Hi Richard - I'd check your bedpostx output files, run mri_info on them to > make sure they have the right number of slices. The monitoring script that > produces the

Re: [Freesurfer] Running Tracula -bedpostx and -path

2012-04-24 Thread Anastasia Yendiki
Hi Richard - I'd check your bedpostx output files, run mri_info on them to make sure they have the right number of slices. The monitoring script that produces the "slices processed" messages checks only every once in a while, so you won't see a separate message for each slice. The warnings f

[Freesurfer] Running Tracula -bedpostx and -path

2012-04-24 Thread Richard Binney
Hi Anastasia, I ran bedpost directly: bedpostx dmri It seemed to run fine, not exiting with any errors. the only thing that concerned me was that the last output in the terminal was 50 slices processed [when I have 54] queing post-processing stage then it exited. It seemed to run rather quicke