Re: [Freesurfer] Retinotopy Registration to Anatomical

2011-07-31 Thread Michelle Umali
Hi Bruce, So for the following command: bbregister --s bert --mov func.nii --init-fsl --reg register.dat tkregister2 --mov func.nii --reg register.dat --surf In the case of a retinotopy analysis, which files are register.dat and func.nii? Quoting Bruce Fischl : > Hi Michelle > Try

Re: [Freesurfer] Retinotopy Registration to Anatomical

2011-07-31 Thread Bruce Fischl
Hi Michelle Try using bbregister. Cheers Bruce On Jul 31, 2011, at 6:54 PM, Michelle Umali wrote: > Dear Freesurfers, > During my retinotopy analysis, I was getting very strange fieldsign > data (blue and red speckles) and my polar and eccentricity data was > limited to the occipital pol

[Freesurfer] Retinotopy Registration to Anatomical

2011-07-31 Thread Michelle Umali
Dear Freesurfers, During my retinotopy analysis, I was getting very strange fieldsign data (blue and red speckles) and my polar and eccentricity data was limited to the occipital pole. It was suggested that I check registration between the functional and anatomical. I was looking up tkregi