Hi Bruce,
So for the following command:
bbregister --s bert --mov func.nii --init-fsl --reg register.dat
tkregister2 --mov func.nii --reg register.dat --surf
In the case of a retinotopy analysis, which files are register.dat and
func.nii?
Quoting Bruce Fischl <fis...@nmr.mgh.harvard.edu>:
> Hi Michelle
> Try using bbregister.
>
> Cheers
> Bruce
>
>
>
> On Jul 31, 2011, at 6:54 PM, Michelle Umali <m...@columbia.edu> wrote:
>
>> Dear Freesurfers,
>> During my retinotopy analysis, I was getting very strange fieldsign
>> data (blue and red speckles) and my polar and eccentricity data was
>> limited to the occipital pole. It was suggested that I check
>> registration between the functional and anatomical.
>>
>> I was looking up tkregister2 help to figure this out but am still
>> unsure how to register the polar and eccentricity data to the
>> anatomical.
>>
>> Any help would be most appreciated.
>>
>> -Michelle Umali
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>>
>>
>
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