" , "freesurfer"
>
> Sent: Wednesday, October 20, 2010 7:51:06 PM GMT +01:00 Amsterdam / Berlin /
> Bern / Rome / Stockholm / Vienna
> Subject: Re: [Freesurfer] Retinotopic mapping of only polar data]
>
> Oh, I see now. I did not read your subject line carefully.
st,
Frank
- Original Message -
From: "Douglas N Greve"
To: "Frank Leoné" , "freesurfer"
Sent: Wednesday, October 20, 2010 7:51:06 PM GMT +01:00 Amsterdam / Berlin /
Bern / Rome / Stockholm / Vienna
Subject: Re: [Freesurfer] Retinotopic mapping of only
Frank
>> - Original Message -
>> From: "Douglas N Greve"
>> To: "Frank Leoné"
>> Cc: freesurfer@nmr.mgh.harvard.edu
>> Sent: Monday, October 18, 2010 5:08:42 PM GMT +01:00 Amsterdam / Berlin /
>> Bern / Rome / Stockholm
t: Monday, October 18, 2010 5:08:42 PM GMT +01:00 Amsterdam / Berlin / Bern
/ Rome / Stockholm / Vienna
Subject: Re: [Freesurfer] Retinotopic mapping of only polar data]
Can you let me know when you have processed a set with the new tools?
It's going to be a lot easier for me to instruct you
; Aan: "Frank Leoné"
> Cc: freesurfer@nmr.mgh.harvard.edu
> Verzonden: Donderdag 14 oktober 2010 22:52:21 GMT +01:00 Amsterdam / Berlijn
> / Bern / Rome / Stockholm / Wenen
> Onderwerp: Re: [Freesurfer] Retinotopic mapping of only polar data]
>
>
> Hi Frank, sf
nk Leoné"
Cc: freesurfer@nmr.mgh.harvard.edu
Verzonden: Donderdag 14 oktober 2010 22:52:21 GMT +01:00 Amsterdam / Berlijn /
Bern / Rome / Stockholm / Wenen
Onderwerp: Re: [Freesurfer] Retinotopic mapping of only polar data]
Hi Frank, sfa-sess does not exist in version 5 of FreeSurfer be
the scale bar
>>> states it ranges from 1.18 to 1.18, but I don't see the sense in that. What
>>> will come out? Radians I pressume?"
>>>
>>> Is it possible to edit the wikipages ourselves btw? I could add some more /
>>> update the info on the retinotopic mapp
Frank
> >
> > - Original Message -
> > From: "f.le...@donders.ru.nl"
> > To: freesurfer@nmr.mgh.harvard.edu
> > Sent: Monday, January 11, 2010 9:15:43 AM GMT +01:00 Amsterdam / Berlin /
> > Bern / Rome / Stockholm / Vienna
> > Subject: Re: [Fr
the info on the retinotopic mapping to help other people when I got
> > it all figured out.
> >
> >kind regards, thanks in advance,
> >
> > Frank
> >
> > - Original Message -
> > From: "f.le...@donders.ru.nl"
> > To: fre
;kind regards, thanks in advance,
>
> Frank
>
> - Original Message -
> From: "f.le...@donders.ru.nl"
> To: freesurfer@nmr.mgh.harvard.edu
> Sent: Monday, January 11, 2010 9:15:43 AM GMT +01:00 Amsterdam / Berlin /
> Bern / Rome / Stockholm / Vienn
vard.edu
Sent: Friday, January 8, 2010 4:26:21 PM GMT +01:00 Amsterdam / Berlin / Bern /
Rome / Stockholm / Vienna
Subject: Re: [Freesurfer] Retinotopic mapping of only polar data
You can generate a register.dat with either fslregister-sess or
spmregister-sess, or, if you have it in your version
MT +01:00 Amsterdam / Berlin / Bern /
Rome / Stockholm / Vienna
Subject: Re: [Freesurfer] Retinotopic mapping of only polar data
You can generate a register.dat with either fslregister-sess or
spmregister-sess, or, if you have it in your version, use bbregister
(note that there is not a -sess versi
;
> Cc: freesurfer@nmr.mgh.harvard.edu
> Sent: Monday, January 4, 2010 9:35:51 AM GMT +01:00 Amsterdam / Berlin / Bern
> / Rome / Stockholm / Vienna
> Subject: Re: [Freesurfer] Retinotopic mapping of only polar data
>
> Hi everyone,
>
> I fixed it with the help o
Frank
- Original Message -
From: "f.le...@donders.ru.nl"
Cc: freesurfer@nmr.mgh.harvard.edu
Sent: Monday, January 4, 2010 9:35:51 AM GMT +01:00 Amsterdam / Berlin / Bern /
Rome / Stockholm / Vienna
Subject: Re: [Freesurfer] Retinotopic mapping of only polar data
Hi every
rank Leoné"
Cc: freesurfer@nmr.mgh.harvard.edu
Sent: Tuesday, December 22, 2009 7:58:23 PM GMT +01:00 Amsterdam / Berlin /
Bern / Rome / Stockholm / Vienna
Subject: Re: [Freesurfer] Retinotopic mapping of only polar data
Do you have read permissions to the file? If so, can you send the log
file
>> ??? Attempted to access tmp(NaN); index must be a positive integer or
>>> logical.
>>>
>
>
>>> ??? Attempted to access tmp(NaN); index must be a positive integer or
>>> logical.
>>>
>
>
>>> ??? Attempted
le 'lastslice'.
>>
>> >> >> ??? Attempt to reference field of non-structure array.
Error in ==> MRIwrite at 94
hdr.dim = [mri.volsize(2) mri.volsize(1) mri.volsize(3) mri.nframes];
>> >> >> ??? Attempt to reference field of
If you run the retinotopy analysis, it will expect eccen. If it stops
without doing the polar analysis, you can "fool" it by copying the polar
data into the eccen directory.
doug
f.le...@donders.ru.nl wrote:
> Dear all,
>
> I just started using FreeSurfer, specifically for retinotopic data, on
Dear all,
I just started using FreeSurfer, specifically for retinotopic data, on the
moment only polar data. So I followed the guide as mentioned on
http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastIndividualRetinotopyAnalysis .
This does seem to work to some extend, except that it complains that
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