Hi Frank, sfa-sess does not exist in  version 5 of FreeSurfer because 
its functions have been incorporated into selxavg3-sess. It will be a 
lot easier to support you if you move to version 5. Unfortunately, I 
have been slow in getting it documented. Having said that, I think the 
new version is a lot easier to use. It is very similar to regular task 
studies, which is pretty well documented (see 
http://nmr.mgh.harvard.edu/~greve/fsfast.intro.ppt).

For retinotopy, there are only a few deviations:
1.a. When you create the analysis, specify something like:
        mkanalysis-sess -a rtopy.self.lh -surface self lh -TR 2 -fwhm 5  
-retinotopy 30 -paradigm rtopy.par
   where "-retinotopy 30" means that it is a retinotopy study with a 
period of 30 sec
1.b Run selxavg3-sess (instead of sfa-sess)
1.c Run tksurfer-sess, like
        tksurfer-sess -s sess -a rtopy.self.lh
      This will show you the eccen and polor contrasts
2.a Create a field sign (with an occipital patch) with:
    fieldsign-sess -a rtopy.lh -s sess -occip
2.b View the fieldsign
    tksurfer-sess -s sess -a rtopy.self.lh -fieldsign

The above assumes that you want to analyze the data on the subject's 
left hemi. Make and run anther analysis for the right hemi

doug


f.le...@donders.ru.nl wrote:
> Hi everyone,
>
> The e-mail included below I sent some time ago, maybe it slipped through. In 
> the mean time I did find out I can plot the results with tksurfer-sess like
>
> tksurfer-sess -s S2_FS -h rh -analysis rtopy -c polar -map h
>
> But then two big questions remain:
> - How to interpret these color codes?
> - How to threshold them on significance?
> (Third one: how to interpolate them to get away from the patchy 
> representation?)
>
> The other questions stated below are also still relevant.
>
> Asked this before, but can we add stuff ourselves to the wiki? Found out 
> quite a bit about the retinotopic inner workings which I wasn't able to find 
> anywhere else, might help some others.
>
>     kind regards,
>
>          Frank
>
> Old topic, but it is directly related, so I'll just continue it here.
>
> In the end I have the spots on the right place, but now it's not clear
> to me how to interpret the map. I have created three overlays (sign,
> log10 * sin, log10 * cos, like mentioned in selfreq.pdf) and loaded them
> all three in tksurfer. Most important question now: how to relate these
> three to get one figure instead of three separate?
>
> Other more minor questions:
> - What do the values actually mean? Apparently I can threshold on the
> basis of them, but that does't make sense to do, because the direction
> info is also in there, right? I should probably threshold the F-values
> first, before overlaying them on the inflated brain.
> - What happened to sfa-sess in the new version of freesurfer? I can't
> seem to find it.
> - Why does the sfa-sess script check whether amp data is present?
> Looking at the script, the line that checks whether there is amplitude
> data can safely be removed.
> - Just like the original Sereno paper, I have 20s pre and post stimulus
> presentation time. I now only use the data where the convolved DM
> predicts there will be signal, so discarding the first 20s and, due to
> the HRF, keeping almost the entire second 20s. Is this the correct thing
> to do, or should I rather keep everything / make sure I have an exact
> number of periods for each stimulus?
>
> Thanks a lot in advance,
>
>        kind regards,
>
>              Frank
>
>
> On Mon, 2010-01-18 at 17:32 -0500, Douglas N Greve wrote:
>   
>> If the activation is showing up in the wrong places, then that probably 
>> means that the registration is off. Have you checked the registration.
>>
>> doug
>>
>> f.le...@donders.ru.nl wrote:
>>     
>>> Probably my e-mail just slipped through, so just a short notice that I 
>>> still have the problem with the overlay mentioned in the last e-mail:
>>>
>>> "I now have a polar map overlayed on my inflated brain. But something seems 
>>> to be amiss, because it plots it mainly on the temporal lobe, with nothing 
>>> on the most dorsal slices, while actually I only scanned the 18 most dorsal 
>>> (oriented along the occipital-parietal axis), sot here shouldn't be 
>>> anything in the temporal or inferior frontal lobe. How can this be/where is 
>>> it going wrong?
>>>
>>> Moreover, I'm not sure on the format used by the polar map: the scale bar 
>>> states it ranges from 1.18 to 1.18, but I don't see the sense in that. What 
>>> will come out? Radians I pressume?"
>>>
>>> Is it possible to edit the wikipages ourselves btw? I could add some more / 
>>> update the info on the retinotopic mapping to help other people when I got 
>>> it all figured out.
>>>
>>>    kind regards, thanks in advance,
>>>
>>>         Frank
>>>
>>> ----- Original Message -----
>>> From: "f.le...@donders.ru.nl" <f.le...@fcdonders.ru.nl>
>>> To: freesurfer@nmr.mgh.harvard.edu
>>> Sent: Monday, January 11, 2010 9:15:43 AM GMT +01:00 Amsterdam / Berlin / 
>>> Bern / Rome / Stockholm / Vienna
>>> Subject: Re: [Freesurfer] Retinotopic mapping of only polar data
>>>
>>> Hi everyone,
>>>
>>> Doug: thanks a lot for the reply, that indeed worked, I now have a polar 
>>> map overlayed on my inflated brain. But something seems to be amiss, 
>>> because it plots it mainly on the temporal lobe, with nothing on the most 
>>> dorsal slices, while actually I only scanned the 18 most dorsal (oriented 
>>> along the occipital-parietal axis), sot here shouldn't be anything in the 
>>> temporal or inferior frontal lobe. How can this be/where is it going wrong?
>>>
>>> Moreover, I'm not sure on the format used by the polar map: the scale bar 
>>> states it ranges from 1.18 to 1.18, but I don't see the sense in that. What 
>>> will come out? Radians I pressume?
>>>
>>>     kind regards, thanks a lot in advance,
>>>
>>>           Frank
>>>
>>> ----- Original Message -----
>>> From: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu>
>>> To: "Frank Leoné" <f.le...@donders.ru.nl>
>>> Cc: freesurfer@nmr.mgh.harvard.edu
>>> Sent: Friday, January 8, 2010 4:26:21 PM GMT +01:00 Amsterdam / Berlin / 
>>> Bern / Rome / Stockholm / Vienna
>>> Subject: Re: [Freesurfer] Retinotopic mapping of only polar data
>>>
>>> You can generate a register.dat with either fslregister-sess or 
>>> spmregister-sess, or, if you have it in your version, use bbregister 
>>> (note that there is not a -sess version for this yet).
>>>
>>> You can then use mri_vol2surf to resample the h.nii file to the surface, 
>>> then view it in tksurfer. You can also extract certain frames with 
>>> mri_convert with the --frame option.
>>>
>>> doug
>>>
>>> f.le...@donders.ru.nl wrote:
>>>   
>>>       
>>>> Hi everyone,
>>>>
>>>> Still not working fully, partly because I'm missing some info on the file 
>>>> formats. What I now did was a run of selfreqavg with four input polar 
>>>> sessions, which ran succesfully. This gives me the expected h.nii. Now I 
>>>> either want to 
>>>>
>>>> - use this h file directly, using paint-sess (get message register.dat is 
>>>> missing) and sliceview-sess (get message it can't determine format 
>>>> h-offset, which makes sense, because it doesn't exist)
>>>> - or extract w files from the first three layers of the nii files and 
>>>> superimpose them in tksurfer. I don't know how I should extract them 
>>>> though. Can use the SPM surfrend functions, but I can't imagine that is 
>>>> the way, or is it?
>>>>
>>>> Hopefully someone can help me along either of the two paths, I'm really 
>>>> eager to see whether the retinotopic analysis worked. Thanks a lot in 
>>>> advance!
>>>>
>>>>       kind regards,
>>>>
>>>>                 Frank
>>>>
>>>> ----- Original Message -----
>>>> From: "f.le...@donders.ru.nl" <f.le...@fcdonders.ru.nl>
>>>> Cc: freesurfer@nmr.mgh.harvard.edu
>>>> Sent: Monday, January 4, 2010 9:35:51 AM GMT +01:00 Amsterdam / Berlin / 
>>>> Bern / Rome / Stockholm / Vienna
>>>> Subject: Re: [Freesurfer] Retinotopic mapping of only polar data
>>>>
>>>> Hi everyone,
>>>>
>>>> I fixed it with the help of Jascha: when using the full path, e.g. 
>>>> /home/frank/etc.../007/f.nii it does find them. So it is now running. 
>>>> Thanks for the help!
>>>>
>>>>        kind regards,
>>>>
>>>>                Frank
>>>>
>>>> ----- Original Message -----
>>>> From: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu>
>>>> To: "Frank Leoné" <f.le...@donders.ru.nl>
>>>> Cc: freesurfer@nmr.mgh.harvard.edu
>>>> Sent: Tuesday, December 22, 2009 7:58:23 PM GMT +01:00 Amsterdam / Berlin 
>>>> / Bern / Rome / Stockholm / Vienna
>>>> Subject: Re: [Freesurfer] Retinotopic mapping of only polar data
>>>>
>>>> Do you have read permissions to the file? If so, can you send the log 
>>>> file created by sfa-sess?
>>>>
>>>> f.le...@donders.ru.nl wrote:
>>>>   
>>>>     
>>>>         
>>>>> Thanks a lot for the reply. I now bump into different problems though: it 
>>>>> doesn't understand my f.nii file, see below. I run:
>>>>>
>>>>> fr...@frank-desktop:~/PhD/data/Exp1_Saccades_phase$ sfa-sess -a rtopy -s 
>>>>> FSFAST_S1/
>>>>>
>>>>> and I think the main error line is:
>>>>>
>>>>> ERROR: cannot determine format of 007/f
>>>>>   
>>>>>     
>>>>>       
>>>>>           
>>>>>>> ??? Attempt to reference field of non-structure array.
>>>>>>>       
>>>>>>>         
>>>>>>>           
>>>>>>>               
>>>>> 007 is my first session (is a dir) and in there is one f.nii, which 
>>>>> includes all the scans of that run. . Previously I tried it with separate 
>>>>> scan files, but that didn't work either. So what does it expect? And will 
>>>>> it work with data preprocessed in SPM instead in FreeSurfer? The rest of 
>>>>> the dir structure is setup as specified in the guide
>>>>>
>>>>> Hopefully someone can help me, thanks a lot in advance,
>>>>>
>>>>>     kind regards,
>>>>>
>>>>>             Frank
>>>>>
>>>>> fr...@frank-desktop:~/PhD/data/Exp1_Saccades_phase$ mkanalysis-sess.new 
>>>>> -force -a rtopy -TR 2.12 -designtype retinotopy -paradigm rtopy.par 
>>>>> -funcstem f -ncycles 8
>>>>> INFO:  analysis rtopy exists, but overwrite forced by user.
>>>>> Completed successfully
>>>>> fr...@frank-desktop:~/PhD/data/Exp1_Saccades_phase$ sfa-sess -a rtopy -s 
>>>>> FSFAST_S1/
>>>>> --------------------------------------------------------------
>>>>> sfa-sess logfile is 
>>>>> /home/frank/PhD/data/Exp1_Saccades_phase/log/sfa-sess-bold-rtopy-0912221252.log
>>>>> --------------------------------------------------------------
>>>>> -------------------------------------------
>>>>> /home/frank/PhD/data/Exp1_Saccades_phase/FSFAST_S1 
>>>>> Tue Dec 22 12:52:30 CET 2009
>>>>> INFO (FSFAST_S1): RunList = 007 008 009 010 011
>>>>> --------------------------------------------------
>>>>> /home/frank/PhD/data/Exp1_Saccades_phase/FSFAST_S1/bold
>>>>> selfreqavg -TR 2.12 -o rtopy/polar/h -i 007/f -i 008/f -i 009/f -i 010/f 
>>>>> -cfg /home/frank/PhD/data/Exp1_Saccades_phase/rtopy/analysis.cfg -parname 
>>>>> rtopy.par
>>>>> --------------------------------------------------
>>>>> --- Parsing Config File: 
>>>>> /home/frank/PhD/data/Exp1_Saccades_phase/rtopy/analysis.cfg ----
>>>>> -ncycles 8 -delay 0 -nskip 0 -fwhm 0
>>>>> DirectionList: +1 +1 +1 -1
>>>>> Warning: Unable to open display 'iconic'.  You will not be able to 
>>>>> display graphics on the screen.
>>>>>
>>>>>                             < M A T L A B (R) >
>>>>>                   Copyright 1984-2009 The MathWorks, Inc.
>>>>>                 Version 7.8.0.347 (R2009a) 64-bit (glnxa64)
>>>>>                              February 12, 2009
>>>>>
>>>>>  
>>>>>   To get started, type one of these: helpwin, helpdesk, or demo.
>>>>>   For product information, visit www.mathworks.com.
>>>>>  
>>>>>   
>>>>>     
>>>>>       
>>>>>           
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Extension format = nii
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                       
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                     
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                       
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                       
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                       
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                       
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>   
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                       
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                       
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>       
>>>>>>>>>>>>>>>>>>> hanrad = 0
>>>>>>>>>>>>>>>>>>>                               
>>>>>>>>>>>>>>>>>>>                                 
>>>>>>>>>>>>>>>>>>>                                   
>>>>>>>>>>>>>>>>>>>                                       
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ERROR: cannot determine format of 007/f
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                             
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                   
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                             
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                     
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                             
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                       
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                             
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                           
>>>>>>> ??? Attempt to reference field of non-structure array.
>>>>>>>       
>>>>>>>         
>>>>>>>           
>>>>>>>               
>>>>>  
>>>>>   
>>>>>     
>>>>>       
>>>>>           
>>>>>>> ??? Attempt to reference field of non-structure array.
>>>>>>>       
>>>>>>>         
>>>>>>>           
>>>>>>>               
>>>>>  
>>>>>   
>>>>>     
>>>>>       
>>>>>           
>>>>>>> ??? Attempt to reference field of non-structure array.
>>>>>>>       
>>>>>>>         
>>>>>>>           
>>>>>>>               
>>>>>  
>>>>>   
>>>>>     
>>>>>       
>>>>>           
>>>>>>>>> ??? Attempt to reference field of non-structure array.
>>>>>>>>>           
>>>>>>>>>             
>>>>>>>>>               
>>>>>>>>>                   
>>>>>  
>>>>>   
>>>>>     
>>>>>       
>>>>>           
>>>>>>>>> ??? Undefined function or variable 'lastslice'.
>>>>>>>>>           
>>>>>>>>>             
>>>>>>>>>               
>>>>>>>>>                   
>>>>>  
>>>>>   
>>>>>     
>>>>>       
>>>>>           
>>>>>>> ??? Attempt to reference field of non-structure array.
>>>>>>>       
>>>>>>>         
>>>>>>>           
>>>>>>>               
>>>>>  
>>>>>   
>>>>>     
>>>>>       
>>>>>           
>>>>>>>>>>> ??? Attempt to reference field of non-structure array.
>>>>>>>>>>>               
>>>>>>>>>>>                 
>>>>>>>>>>>                   
>>>>>>>>>>>                       
>>>>>  
>>>>>   
>>>>>     
>>>>>       
>>>>>           
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ??? Index exceeds matrix 
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> dimensions.
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                 
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                 
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                       
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                 
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                 
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                         
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                 
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                 
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                           
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                 
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                 
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                               
>>>>>  
>>>>>   
>>>>>     
>>>>>       
>>>>>           
>>>>>>>>>>>>>>> ??? Attempted to access tmp(NaN); index must be a positive 
>>>>>>>>>>>>>>> integer or logical.
>>>>>>>>>>>>>>>                       
>>>>>>>>>>>>>>>                         
>>>>>>>>>>>>>>>                           
>>>>>>>>>>>>>>>                               
>>>>>  
>>>>>   
>>>>>     
>>>>>       
>>>>>           
>>>>>>> ??? Attempted to access tmp(NaN); index must be a positive integer or 
>>>>>>> logical.
>>>>>>>       
>>>>>>>         
>>>>>>>           
>>>>>>>               
>>>>>  
>>>>>   
>>>>>     
>>>>>       
>>>>>           
>>>>>>> ??? Attempted to access tmp(NaN); index must be a positive integer or 
>>>>>>> logical.
>>>>>>>       
>>>>>>>         
>>>>>>>           
>>>>>>>               
>>>>>  
>>>>>   
>>>>>     
>>>>>       
>>>>>           
>>>>>>> ??? Attempted to access tmp(NaN); index must be a positive integer or 
>>>>>>> logical.
>>>>>>>       
>>>>>>>         
>>>>>>>           
>>>>>>>               
>>>>>  
>>>>>   
>>>>>     
>>>>>       
>>>>>           
>>>>>>> ??? Attempted to access tmp(NaN); index must be a positive integer or 
>>>>>>> logical.
>>>>>>>       
>>>>>>>         
>>>>>>>           
>>>>>>>               
>>>>>  
>>>>>   
>>>>>     
>>>>>       
>>>>>           
>>>>>>> ??? Attempted to access tmp(NaN); index must be a positive integer or 
>>>>>>> logical.
>>>>>>>       
>>>>>>>         
>>>>>>>           
>>>>>>>               
>>>>>  
>>>>>   
>>>>>     
>>>>>       
>>>>>           
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Slice >> ??? Undefined function or variable 
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> 'lastslice'.
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                                 
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>       
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                                 
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>         
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                                 
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>           
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                                                 
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>               
>>>>>  
>>>>>   
>>>>>     
>>>>>       
>>>>>           
>>>>>>>>>>> ??? Attempt to reference field of non-structure array.
>>>>>>>>>>>               
>>>>>>>>>>>                 
>>>>>>>>>>>                   
>>>>>>>>>>>                       
>>>>> Error in ==> MRIwrite at 94
>>>>>   hdr.dim = [mri.volsize(2) mri.volsize(1) mri.volsize(3)  mri.nframes];
>>>>>  
>>>>>   
>>>>>     
>>>>>       
>>>>>           
>>>>>>>>>>> ??? Attempt to reference field of non-structure array.
>>>>>>>>>>>               
>>>>>>>>>>>                 
>>>>>>>>>>>                   
>>>>>>>>>>>                       
>>>>> Error in ==> MRIwrite at 94
>>>>>   hdr.dim = [mri.volsize(2) mri.volsize(1) mri.volsize(3)  mri.nframes];
>>>>>  
>>>>>   
>>>>>     
>>>>>       
>>>>>           
>>>>>>>>>>> ??? Attempt to reference field of non-structure array.
>>>>>>>>>>>               
>>>>>>>>>>>                 
>>>>>>>>>>>                   
>>>>>>>>>>>                       
>>>>> Error in ==> MRIwrite at 94
>>>>>   hdr.dim = [mri.volsize(2) mri.volsize(1) mri.volsize(3)  mri.nframes];
>>>>>  
>>>>>   
>>>>>     
>>>>>       
>>>>>           
>>>>>>>>>>>>> Saving header to rtopy/polar/h
>>>>>>>>>>>>>                   
>>>>>>>>>>>>>                     
>>>>>>>>>>>>>                       
>>>>>>>>>>>>>                           
>>>>>>> Could not open rtopy/polar/h.sfa for writing
>>>>>>>       
>>>>>>>         
>>>>>>>           
>>>>>>>               
>>>>> quiting matlab
>>>>> selfreqavg COMPLETED
>>>>> mri_convert rtopy/polar/h.nii -o rtopy/polar/h-offset.nii --frame 10
>>>>> mri_convert rtopy/polar/h.nii -o rtopy/polar/h-offset.nii --frame 10 
>>>>> niiRead(): error opening file rtopy/polar/h.nii
>>>>>
>>>>> ----- Original Message -----
>>>>> From: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu>
>>>>> To: "Frank Leoné" <f.le...@donders.ru.nl>
>>>>> Cc: freesurfer@nmr.mgh.harvard.edu
>>>>> Sent: Wednesday, December 16, 2009 5:12:41 PM GMT +01:00 Amsterdam / 
>>>>> Berlin / Bern / Rome / Stockholm / Vienna
>>>>> Subject: Re: [Freesurfer] Retinotopic mapping of only polar data
>>>>>
>>>>> If you run the retinotopy analysis, it will expect eccen. If it stops 
>>>>> without doing the polar analysis, you can "fool" it by copying the polar 
>>>>> data into the eccen directory.
>>>>>
>>>>> doug
>>>>>
>>>>> f.le...@donders.ru.nl wrote:
>>>>>   
>>>>>     
>>>>>       
>>>>>           
>>>>>> Dear all,
>>>>>>
>>>>>> I just started using FreeSurfer, specifically for retinotopic data, on 
>>>>>> the moment only polar data. So I followed the guide as mentioned on 
>>>>>> http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastIndividualRetinotopyAnalysis
>>>>>>  . This does seem to work to some extend, except that it complains that 
>>>>>> I don't have eccentricity data. He is right about that, but is the 
>>>>>> analysis also doable with the eccentricity data? I really hope so, 
>>>>>> thanks a lot in advance,
>>>>>>
>>>>>>       kind regards,
>>>>>>
>>>>>>             Frank
>>>>>>
>>>>>>   
>>>>>>     
>>>>>>       
>>>>>>         
>>>>>>             
>>>>>   
>>>>>     
>>>>>       
>>>>>           
>>>>   
>>>>     
>>>>         
>>>   
>>>       
>
> ----- Oorspronkelijk bericht -----
> Van: "Frank Leone" <f.le...@donders.ru.nl>
> Aan: "f leone" <f.le...@donders.ru.nl>
> Verzonden: Woensdag 6 oktober 2010 17:16:43 GMT +01:00 Amsterdam / Berlijn / 
> Bern / Rome / Stockholm / Wenen
> Onderwerp: [Fwd: Re: [Freesurfer] Retinotopic mapping of only polar data]
>
>
>
>   

-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358 
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html

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