Re: [Freesurfer] Resting State Networks on Cortical Surface

2014-03-13 Thread Douglas N Greve
gt;c_r: -1 >c_a: -17 >c_s: 19 > vox2ras1: [4x4 double] >Mdc: [3x3 double] > volres: [1 1 1] > tkrvox2ras: [4x4 double] > > -------------------- > Date: We

Re: [Freesurfer] Resting State Networks on Cortical Surface

2014-03-10 Thread Douglas Greve
sh. Thanks. From: andrewz...@live.com.au To: gr...@nmr.mgh.harvard.edu Date: Tue, 11 Mar 2014 11:54:10 +1100 CC: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Resting State Networks on Cortical Surface Regarding matlab: Cu

Re: [Freesurfer] Resting State Networks on Cortical Surface

2014-03-10 Thread Xuelong Zhao
...@nmr.mgh.harvard.edu Date: Tue, 11 Mar 2014 11:54:10 +1100 CC: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Resting State Networks on Cortical Surface Regarding matlab: Currently, I have in freesurfer the surface extracted via recon-all. I also have the overlay from running mri_vol2surf on

Re: [Freesurfer] Resting State Networks on Cortical Surface

2014-03-10 Thread Xuelong Zhao
need to do some further processing? Thanks. > Date: Mon, 10 Mar 2014 11:25:23 -0400 > From: gr...@nmr.mgh.harvard.edu > To: andrewz...@live.com.au > CC: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Resting State Networks on Cortical Surface > > > On 03/0

Re: [Freesurfer] Resting State Networks on Cortical Surface

2014-03-10 Thread Douglas N Greve
y, what has to be mgz? What matlab command? What instructions? doug > > > > Date: Thu, 6 Mar 2014 10:19:25 -0500 > From: gr...@nmr.mgh.harvard.edu > To: andrewz...@live.com.au > CC: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Resting Stat

Re: [Freesurfer] Resting State Networks on Cortical Surface

2014-03-09 Thread Xuelong Zhao
te: Thu, 6 Mar 2014 10:19:25 -0500 From: gr...@nmr.mgh.harvard.edu To: andrewz...@live.com.au CC: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Resting State Networks on Cortical Surface On 3/6/14 6:39 AM, Xuelong Zhao wrote:

Re: [Freesurfer] Resting State Networks on Cortical Surface

2014-03-06 Thread Douglas Greve
u tried it in tksurfer? Thanks again. Date: Tue, 4 Mar 2014 22:52:38 -0500 From: gr...@nmr.mgh.harvard.edu To: andrewz...@live.com.au CC: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Resting State Networks on Cortical Surface On 3/4/1

Re: [Freesurfer] Resting State Networks on Cortical Surface

2014-03-06 Thread Xuelong Zhao
a lot. Maybe I didn't process/register? Thanks again. Date: Tue, 4 Mar 2014 22:52:38 -0500 From: gr...@nmr.mgh.harvard.edu To: andrewz...@live.com.au CC: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Resting State Networks on Cortical Surface On

Re: [Freesurfer] Resting State Networks on Cortical Surface

2014-03-04 Thread Douglas Greve
ith a .nii extension doug Thanks! > Date: Tue, 4 Mar 2014 10:37:19 -0500 > From: gr...@nmr.mgh.harvard.edu > To: andrewz...@live.com.au; freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Resting State Networks on Cortical Surface > > > On 03/03/2014 11:25 PM, Xuelon

Re: [Freesurfer] Resting State Networks on Cortical Surface

2014-03-04 Thread Xuelong Zhao
> Date: Tue, 4 Mar 2014 10:37:19 -0500 > From: gr...@nmr.mgh.harvard.edu > To: andrewz...@live.com.au; freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Resting State Networks on Cortical Surface > > > On 03/03/2014 11:25 PM, Xuelong Zhao wrote: > > Hi Doug, thank

Re: [Freesurfer] Resting State Networks on Cortical Surface

2014-03-04 Thread Douglas N Greve
nks! > > > Date: Mon, 3 Mar 2014 14:20:55 -0500 > > From: gr...@nmr.mgh.harvard.edu > > To: freesurfer@nmr.mgh.harvard.edu > > Subject: Re: [Freesurfer] Resting State Networks on Cortical Surface > > > > > > you will need to create a registration between your

Re: [Freesurfer] Resting State Networks on Cortical Surface

2014-03-03 Thread Xuelong Zhao
nks! > Date: Mon, 3 Mar 2014 14:20:55 -0500 > From: gr...@nmr.mgh.harvard.edu > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Resting State Networks on Cortical Surface > > > you will need to create a registration between your volume (maps) and > the anato

Re: [Freesurfer] Resting State Networks on Cortical Surface

2014-03-03 Thread Douglas N Greve
you will need to create a registration between your volume (maps) and the anatomical. You can do this with bbregister. Then use mri_vol2surf to map your ICs to the surface doug On 03/02/2014 04:21 AM, Xuelong Zhao wrote: > > Hi, > > I am trying to display the 20 ICA components in this nifti fi

[Freesurfer] Resting State Networks on Cortical Surface

2014-03-02 Thread Xuelong Zhao
Hi, I am trying to display the 20 ICA components in this nifti file http://brainmap.org/icns/maps.zip onto anatomical template they've provided here http://brainmap.org/icns/colin_tlrc_1x1x1.nii My question is: How do I extract only the cortical surface from the anatomical template and