you will need to create a registration between your volume (maps) and the anatomical. You can do this with bbregister. Then use mri_vol2surf to map your ICs to the surface doug
On 03/02/2014 04:21 AM, Xuelong Zhao wrote: > > Hi, > > I am trying to display the 20 ICA components in this nifti file > > http://brainmap.org/icns/maps.zip > > onto anatomical template they've provided here > > http://brainmap.org/icns/colin_tlrc_1x1x1.nii > > My question is: > > How do I extract only the cortical surface from the anatomical > template and overlay > it with only parts of each ICA component that intersects with the surface? > > > Thanks! > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
