Re: [Freesurfer] Repost: problem with mri_label2label - large amount of holes

The license format has changed, so downloading a new license from the freesurfer registration should solve that: https://surfer.nmr.mgh.harvard.edu/registration.html If not please contact me directly. -Zeke > On Aug 9, 2015, at 8:14 AM, Caspar M. Schwiedrzik > wrote: > > Hi Zeke, we are ge

Re: [Freesurfer] Repost: problem with mri_label2label - large amount of holes

Hi Zeke, we are getting a license file error: ERROR: Invalid FreeSurfer license key found in license file /Applications/freesurfer/.license How should we proceed? Thanks, Caspar On Wednesday, August 5, 2015, wrote: > Hello Caspar, > > I did a quick test and it appears the new dev version of mri

Re: [Freesurfer] Repost: problem with mri_label2label - large amount of holes

Hi Zeke, Thank you, we will give it a try! Caspar On Wednesday, August 5, 2015, wrote: > Hello Caspar, > > I did a quick test and it appears the new dev version of mri_label2label > is still compatible with the version of 5.1 that you have. Please use the > following link to download it and also

Re: [Freesurfer] Repost: problem with mri_label2label - large amount of holes

Hello Caspar, I did a quick test and it appears the new dev version of mri_label2label is still compatible with the version of 5.1 that you have. Please use the following link to download it and also please make sure to back up the version you already have. ftp://surfer.nmr.mgh.harvard.edu/pub

Re: [Freesurfer] Repost: problem with mri_label2label - large amount of holes

Hi Bruce, Doug, and Zeke, just checking back regarding the dev version for mri_label2label. Do you have a build that works on MAC OS 10.9.5 Mavericks? So far, we have been using freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0. Thank you, Caspar 2015-08-03 6:40 GMT-04:00 Caspar M. Schwiedrzik

Re: [Freesurfer] Repost: problem with mri_label2label - large amount of holes

We are using MAC OS 10.9.5 Mavericks and freesurfer-Darwin-leopard- i686-stable-pub-v5.1.0 On Thursday, July 30, 2015, Bruce Fischl wrote: > Hi Caspar > > the dev version of label2label doesn't have this problem. If you let us > know your hardware/software environment Zeke can get you a new bina

Re: [Freesurfer] Repost: problem with mri_label2label - large amount of holes

Hi Caspar the dev version of label2label doesn't have this problem. If you let us know your hardware/software environment Zeke can get you a new binary that should fix this issue cheers Bruce On Thu, 30 Jul 2015, Caspar M. Schwiedrzik wrote: Hi Bruce and Doug, thanks for looking into th

Re: [Freesurfer] Repost: problem with mri_label2label - large amount of holes

Hi Bruce and Doug, thanks for looking into this and sorry for the delay. The command line we are using is: mri_label2label --srclabel /Volumes/Macintosh_HD/Applications/freesurfer/subjects/y$1/label/lh.v1.predict0p8.label --srcsubject y$1 --trglabel /Volumes/Macintosh_HD/Applications/freesurfer/su

Re: [Freesurfer] Repost: problem with mri_label2label - large amount of holes

what is your command line? What do you mean by one anatomy to another? On 7/24/15 9:26 AM, Caspar M. Schwiedrzik wrote: -- Forwarded message -- From: *Caspar M. Schwiedrzik* > Date: Thursday, July 16, 2015 Subject: problem with mri_label2labe

Re: [Freesurfer] Repost: problem with mri_label2label - large amount of holes

Hi Caspar we tried to replicate this and couldn't. Can you upload the subject(s) involved in this and send us the exact command line that shows the problem? cheers Bruce On Fri, 24 Jul 2015, Caspar M. Schwiedrzik wrote: -- Forwarded message -- From: Caspar M. Schwiedrzik