Douglas Greve
> Sent: 07 February 2017 23:08
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] Recon-all - finished with errors
>
> Is that the entire terminal output?
>
>
> On 2/7/17 6:46 AM, Bunday, Karen wrote:
>> Hi
>>
>> Thank you for your
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas Greve
Sent: 07 February 2017 23:08
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Recon-all - finished with errors
Is that the entire terminal output?
On 2/7/17 6:46 AM, B
logy, University College London
>
> -Original Message-
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve
> Sent: 06 February 2017 18:05
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesur
2017 18:05
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Recon-all - finished with errors
That is a strange error. Can you run the following command to try to
replicate:
cd /Applications/freesurfer/subjects/subjKZ/surf
mris_calc -o lh.area.mid lh.area.mid div 2
also, make sure that you hav
That is a strange error. Can you run the following command to try to
replicate:
cd /Applications/freesurfer/subjects/subjKZ/surf
mris_calc -o lh.area.mid lh.area.mid div 2
also, make sure that you have not run out of space on that disk
On 02/06/2017 09:56 AM, Bunday, Karen wrote:
>
> Dear FS
Dear FS members
My previous email was flagged by the fraud detection checks, perhaps due to the
attachment. I am sending this again to see if that was the problem. Apologies
for the repeat of information.
I am having trouble with using the "recon-all" function on one particular
subject. "recon
how much ram do you have?
On Thu, 1 Nov 2012, Christine Smith wrote:
Well, that is funny. Now it has finished without errors. I am not quite sure
what happened. The command line was the same both times: recon-all -make all
-subjid CON1
Is it possible that some other process that was going on on
Well, that is funny. Now it has finished without errors. I am not quite
sure what happened. The command line was the same both times: recon-all
-make all -subjid CON1
Is it possible that some other process that was going on on our server
caused the processing for this subject to end abnormally? We
The command line was: recon-all -make -s CON1
I am not sure why the log said it was: recon-all -s
/usr/local/mridata/D_New_Patient/Lobe_Analysis/CON1 -calabel
I am running it again right now and it said the command line was:
recon-all -s /usr/local/mridata/D_New_Patient/Lobe_Analysis/CON1
-careg
so your recon-all command line was:
recon-all -s /usr/local/mridata/D_New_Patient/Lobe_Analysis/CON1 -calabel
usually -s just takes the subject name/identifier, not the whole path, and
why are you only rerunning calabel? I don't see what the error is, but this
is an unusual usage
On Tue, 30
See my original post at the end of this message and some more
information included below.
What would have been edited between the previous run without errors
and the current run with errors is the brainmask, the wm.mgz file, and
control points.
On Tue, Oct 30, 2012 at 1:21 PM, Christine Smith wr
what were the last 20 lines or so of the recon-all.log?
On Tue, 30 Oct 2012,
Christine Smith wrote:
> Hello,
>
> After successfully running a subject through freesurfer (recon-all
> -make all) several times as I fixed some pial and white matter edits,
> I now get the message that recon-all finish
Hello,
After successfully running a subject through freesurfer (recon-all
-make all) several times as I fixed some pial and white matter edits,
I now get the message that recon-all finished with errors. Inspection
of the recon-all.log doesn't reveal any error messages to me in any
particular step.
Pedro Paulo,
Hi! Sita noticed that the file has a FOV > 256. We have found this to
be a problem in processing, so beginning in v4.2.0, we exit with an
error if it detects this. Normally he solution is simply to include the
flag -cw256 on the recon-all command line. This crops the image to a
F
There is a researcher here who is getting this error in version 4.2.0, I
have uploaded the 001.mgz to the ftp:
TEMPLATE DEFORMATION
second estimation of the COG coord: x=150,y=117, z=145, r=8362
iterations
GLOBAL CSF_MIN=1, CSF_intensity=2, CSF_MAX=4
Hi Jake,
Did it write out the wm.seg.mgz file (would be in the subjects mri
directory)? Is it possible that you either don't have write permissions
in that directory or that you are out of disk space?
Jenni
On Mon, 7 Aug 2006, Jake Freimer wrote:
I was running autorecon2-cp and it said it
I was running autorecon2-cp and it said it finished with errors, below
are the recon-all.log and recon-all-status.log, I couldn't figure out
what the error is.
Mon Aug 7 10:37:16 PDT 2006
[EMAIL PROTECTED] Intensity Normalization2 Mon Aug 7 10:37:16 PDT 2006
[EMAIL PROTECTED] Mask BFS Mon Aug
17 matches
Mail list logo
