Is that the entire terminal output?
On 2/7/17 6:46 AM, Bunday, Karen wrote: > Hi > > Thank you for your email. > > I checked the disk space and there is over 300 GB left. > > I ran the code as you suggested, this is the output: > > "WARNING: # of slices=-92 in header - assuming 124... > Read_signal (/Applications/Freesurfer/subjects/subjKZ/surf/I.001): could not > open file > > No such file or directory > > mris_calc: could not establish read access to 'lh.area.mid' > > No such file or directory" > > It's odd as I did manage to run this subject before, but needed to re-run > with a different .nii and now it will not complete. > > BW > Karen > > Karen Bunday, PhD > Research Associate > Sobell Department of Motor Neuroscience and Movement Disorders > Institute of Neurology, University College London > > -----Original Message----- > From: freesurfer-boun...@nmr.mgh.harvard.edu > [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve > Sent: 06 February 2017 18:05 > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Recon-all - finished with errors > > That is a strange error. Can you run the following command to try to > replicate: > > cd /Applications/freesurfer/subjects/subjKZ/surf > > mris_calc -o lh.area.mid lh.area.mid div 2 > > also, make sure that you have not run out of space on that disk > > > On 02/06/2017 09:56 AM, Bunday, Karen wrote: >> Dear FS members >> >> I am having trouble with using the "recon-all" function on one >> particular subject. "recon-all" does not complete and finishes with >> errors, it seems it does not complete both hemispheres. I am no expert >> in FS so I don't really understand why this is happening and I am >> unable to understand the log (attached). Could someone help interpret >> the log so that I may be able to process this subject? >> >> Many thanks >> >> Karen >> >> Karen Bunday, PhD >> >> Research Associate >> >> Sobell Department of Motor Neuroscience and Movement Disorders >> >> Institute of Neurology, University College London >> >> 33 Queen Square >> >> London >> >> WC1N 3BG >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at http://www.partners.org/complianceline . If the e-mail was sent to you in > error but does not contain patient information, please contact the sender and > properly dispose of the e-mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
