not sure, a pointer to the page would make it easier. probably it is the
T1 image of the mni152 that is distributed with FSL and SPM
On 7/3/17 1:33 AM, M Janani wrote:
Hi Team,
Currently I’m working on ROI analyses. I saw one
article related to VolumeROICorticalThickness in
Hi Team,
Currently I'm working on ROI analyses. I saw one article
related to VolumeROICorticalThickness in Free surfer wiki.
Could anyone please tell me what is the anatomical
file(TT_avg152T1.nii) they are referring to?
I took AAL ROIs from SPM.
Hi Team,
Currently I'm working on ROI analyses. I saw one article
related to VolumeROICorticalThickness in Free surfer wiki.
Could anyone please tell me what is the anatomical
file(TT_avg152T1.nii) they are referring to?
I took AAL ROIs from SPM.
Use --id 1 or --excludeid 0 with mri_segstats. 3rd question answered below.
On 04/01/2014 10:42 AM, Emily Boeke wrote:
> Hi Doug,
>
> I am able to run mri_segstats with slabel below, but it is finding two
> segmentations in my label and producing a column for each. one is associated
> with an I
Hi Doug,
I am able to run mri_segstats with slabel below, but it is finding two
segmentations in my label and producing a column for each. one is associated
with an ID of 0 and one is associated with an ID of 1. I assume that I want the
2nd column (the ID of 1). What is the command doing? Is it
Hi Doug,
Thanks for the response.
Regarding #1, I am still confused. if the ROI boundaries computed in native
space are mapped to fsaverage/mni305 space, doesn't that mean the actual
computing of the averages is done in fsaverage/mni305 space? Why would mapping
to fsaverage/mni305 space be ne
On 03/28/2014 12:04 PM, Emily Boeke wrote:
> Hi Doug,
>
> Thanks for the response.
>
> Regarding #1, I am still confused. if the ROI boundaries computed in native
> space are mapped to fsaverage/mni305 space, doesn't that mean the actual
> computing of the averages is done in fsaverage/mni305 sp
On 03/28/2014 08:51 AM, Emily Boeke wrote:
> Hi Freesurfers,
>
> I have some questions about ROI analyses.
>
> 1. I use the mni305 and fsaverage flags during preprocessing. Does this mean
> that when I run funcroi-config, funcroi-sess, etc, the analysis is being
> done for each subject in mni30
Hi Freesurfers,
I have some questions about ROI analyses.
1. I use the mni305 and fsaverage flags during preprocessing. Does this mean
that when I run funcroi-config, funcroi-sess, etc, the analysis is being done
for each subject in mni305 space, as opposed to native space? Meaning, If I
spec
013 20:31, Tudor Popescu <mailto:tud...@gmail.com>> wrote:
>
> Sorry Doug, wasn't sure whether you'd seen my reply
> Tudor
>
>
> -- Forwarded message --
> From: *Tudor Popescu* mailto:tud...@gmail.com>>
> Dat
Thanks Doug! If I may follow up:
> 3) (I can't see whether there's a tutorial for this, as the main FS
> > site seems to be down at the moment) How can a group comparison of CT
> > be done inside a given ROI, and in what ways can the ROI be specified?
> > I guess the command line version of QDEC
On 04/29/2013 04:13 PM, Tudor Popescu wrote:
> Dear Freesurfers,
>
> I am doing an ROI analysis (group comparison) of cortical thickness,
> and I have some questions that I could use some help with. Many thanks
> in advance!
>
> Tudor
>
> 1) I used aparcstats2table to extract CT values for struc
Dear Freesurfers,
I am doing an ROI analysis (group comparison) of cortical thickness, and I
have some questions that I could use some help with. Many thanks in advance!
Tudor
1) I used aparcstats2table to extract CT values for structures from the
Destrieux atlas, but I cannot identify some impo
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