Re: [Freesurfer] R: Re: Yeo parcellation

2014-07-20 Thread Thomas Yeo
Hi Stefano, Here's what you can do. In your shell (assuming you are using c shell) # First set variable s to be subject id >> set s = 100306_QD95CU_FS # set freesurfer environmental variable SUBJECTS_DIR to point to where the data is >> setenv SUBJECTS_DIR /share/users/imganalysis/yeolab/data/GS

[Freesurfer] R: Re: Yeo parcellation

2014-07-20 Thread stdp82
Hi list and Thomas, I'm running the first step to use Yeo's parcellation. The running is wrong. mri_surf2surf --s Control01 --hemi lh --sval-tal-xyz white --tval lh.white.Control01 --tval-xyz --trgsubject fsaverage5/label/rh.Yeo2011_7NetworksConfidence_N1000.mgz Reading target surface reg $SUBJE