joe.si...@med.uni-heidelberg.de
Date: Thu, 15 Feb 2018 12:08:12 -0500 (EST)
From: Bruce Fischl
Subject: Re: [Freesurfer] Question regarding exporting subcortical
segmentation to .nii ROIs for further analysis in SPM
To
Hi Joe
you can use mri_convert to convert the .mgz volume to nifti if that is
what you want:
mri_convert aseg.mgz aseg.nii.gz
should do the trick. Not sure if that counts as an ROI for SPM. If you want
separate volumes for each structure I think you can use mri_binarize with
the --match fla
Dear Experts
I just recently started using Freesurfer (implemented as a virtual machine on a
Windows machine). After having completed the recon-all procedure, I now want to
export the subcortical segementation as .nii images for further use in SPM. My
aim is to have a ROI for each segmented sub
