Hi Joe
you can use mri_convert to convert the .mgz volume to nifti if that is
what you want:
mri_convert aseg.mgz aseg.nii.gz
should do the trick. Not sure if that counts as an ROI for SPM. If you want
separate volumes for each structure I think you can use mri_binarize with
the --match flag
cheers
Bruce
On Thu, 15 Feb 2018, Simon, Joe wrote:
Dear Experts
I just recently started using Freesurfer (implemented as a virtual machine on a
Windows machine).
After having completed the recon-all procedure, I now want to export the
subcortical segementation
as .nii images for further use in SPM. My aim is to have a ROI for each
segmented subcortical
structure. What would be the easiest way to do this? Any help is appreciated.
Thanks a lot!
Best regards,
Joe
----------------------------------------------------------------
Dr. Dipl.-Psych. Joe Simon
Universitätsklinikum Heidelberg
Klinik für Allgemeine Innere Medizin und Psychosomatik
Im Neuenheimer Feld 410
69120
Tel.: ++49(0)6221-56-38667
joe.si...@med.uni-heidelberg.de
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