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Hi Freesurfer devs,
How can I create a qdec.table.dat file? I tried using a txt file but it
doesn´t works. I attached the qdec.table.dat file that I have created.
Sorry for this absurd question and thanks in advance.
Cheers,
--
*Miguel Ángel Rivas
Dear Recipient,
I am a Master student new comer in FS. I am trying toi use the QDEC ti analyse
some longitudinal data. Most probably my issue is related with the file format.
I tried to use several text editors (mac text editor, gedit and text wrangler)
however I end up in 2 different errors w
ber 14, 2017 9:47:54 AM
> *To:* Arsenije Subotic
> *Subject:* Re: [Freesurfer] Qdec Table Loading Error
> The table is not quite the right format. Your first line is
>
>
> lh.aparc.thickness lh_MeanThickness_thickness
> BrainSegVolNotVent eTIV gender age
>
>
>
can you send the table?
On 12/12/2017 01:18 PM, Arsenije Subotic wrote:
>
> Dear experts,
>
>
> I'm currently trying to import some of my data into Qdec in order to
> perform a group analysis on cortical thickness. All of my data was
> originally in an excel sheet and it had the following varia
Dear experts,
I'm currently trying to import some of my data into Qdec in order to perform a
group analysis on cortical thickness. All of my data was originally in an excel
sheet and it had the following variables (fsid, gender, age, and thickness). I
tried converting it into a file that would
I don't know what you did, but that is still a binary file not a text file
On 2/7/17 4:27 PM, Leblanc Élizabel wrote:
Hi Freesurfer's expert,
I have some trouble with the dec.table.dat file, as many others as I can see. I
am using a mac OS x, I took an excel file with my 4 variables and open
Hi Freesurfer's expert,
I have some trouble with the dec.table.dat file, as many others as I can see. I
am using a mac OS x, I took an excel file with my 4 variables and open it in a
.txt format. then I tried to convert it to a .dat file. I think it worked well
(I wrote mv qdec.table.txt qdec.t
It was the spaces! Thanks for the help
On Jan 13, 2017, at 11:40 AM, Douglas N Greve
mailto:gr...@nmr.mgh.harvard.edu>> wrote:
I'm not sure that QDEC can read in a CSV file. Can you remove the commas
and try again? You'll also have to remove the spaces between column headings
On 01/13/2017 10:5
I'm not sure that QDEC can read in a CSV file. Can you remove the commas
and try again? You'll also have to remove the spaces between column headings
On 01/13/2017 10:55 AM, Paul Rowley wrote:
> Good morning,
> I’m experiencing issues importing data into QDEC. When I upload the table,
> this is
Good morning,
I’m experiencing issues importing data into QDEC. When I upload the table, this
is the error I receive:
Loading data table /Applications/freesurfer/subjects/qdec/qdec.table.dat...
Number of columns: 10
fsid column:1
Number of factors: 9
Number of subjects: 19
ERROR: QdecSu
Gabriella
Sent: Thursday, May 07, 2015 3:02 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] qdec table loading error
Hi FS experts,
I'm having a really tough time trying to get my qdec.table.dat table to load
into the qdec GUI. I have gone through the wiki painstakingly and ha
Hi FS experts,
I'm having a really tough time trying to get my qdec.table.dat table to load
into the qdec GUI. I have gone through the wiki painstakingly and have no idea
why it's giving me this error message:
Reading /usr/local/freesurfer/tktools/tkUtils.tcl
Using /usr/local/freesurfer/lib/tc
Thanks Doug - Nick, do you have any idea what might be happening here? Why
might qdec stop allowing me to select more than one continuous variable?
Thanks!
Laura.
Message: 24
Date: Mon, 04 Jun 2012 11:19:57 -0400
From: Douglas N Greve
Subject: Re: [Freesurfer] qdec table file
To: freesurfer
OK, I've replicated that this is happening, but Nick will have to take a
look.
doug
On 06/04/2012 11:05 AM, Laura M. Tully wrote:
>
>
>
> Hi Doug,
>
> Attached is the qdec table file and associated levels files. It's
> strange that qdec won't let me select more than one continuous
> variable. W
Hi Doug,
Attached is the qdec table file and associated levels files. It's strange
that qdec won't let me select more than one continuous variable. What's
even more strange is that I have been able to do that last month when I
originally looked at these data before doing manual edits and quality
c
the 'generate stats data tables' button in the Subjects tab will do
this. see the section 'Stats Data Import' in the tutorial:
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QdecGroupAnalysis
which is copied here:
> It is possible to import the aseg and aparc data from the
> FreeSurfer-pro
Hi freesurfers
Do anyone know if it's possible to automatically enter in the QDEC table the
gray matter volume of every subject in the study, to avoid
entering this item manually for each one ?
Best regards.
--
Ignacio.
___
Freesurfer mailing list
Fre
there a line break script, which is somehow installed in my system (Sentos),
which cleans this up. you basically type lb "FILENAME"
i can't try and find out what it contains, if you can't get it to work
On 22 September 2010 11:28, James Porter wrote:
> Hello-
>
> I'm having a resurgence of an
there shouldn't be a limit on the number of columns it will read. the
thing to be careful about is the name of a column. sometimes when
importing a spreadsheet, a column name will consist of two words (thus
messing-up the detected number of columns), or it will have a minus "-"
char in the name,
Of course, once I ask
for help I stumble immediately upon the solution. There appears to
be a limit to the number of columns that QDEC is willing to put up
with when reading in tables. If I create a table that only has the
few columns that I'm interested in (as o
can you send me the file?
n.
On Wed, 2010-09-22 at 10:28 -0500, James Porter wrote:
> Hello-
>
> I'm having a resurgence of an old problem
> (http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg12152.html)
> but the old solution is not cutting it. When I try to load a table in QDEC
Hello-
I'm having a resurgence of an old problem
(http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg12152.html)
but the old solution is not cutting it. When I try to load a table
in QDEC 1.4, I get the following error:
Loading
Nathan,
Here are the steps I use to create QDEC dat files on a Mac:
-Export/save your data in SPSS/Excel as a .csv file
-Open the .csv file in TextWrangler (a free text editor for Mac)
-Do a Find & Replace of the "," for " " to make it a space
separated file
-Down at the bottom of the TextWran
Some programs notoriously add Ctrl-M at the end of every line ( or
every cell )
If you have the vi editor you can follow this method
http://www.tech-recipes.com/rx/150/remove-m-characters-at-end-of-lines-in-vi/
to remove all the instances of Ctrl-M and again try in qdec.
Unfortunately I am
Unfortunately I'm not running windows. Are you familiar with any tricks I can
use on a mac?
On 11/17/09 5:15 PM, "Douglas N Greve" wrote:
If you're creating the file in windows, try running dos2unix on the file.
doug
Dankner, Nathan (NIH/NIMH) [F] wrote:
> Hi all,
>
> I am attempting to cre
If you're creating the file in windows, try running dos2unix on the file.
doug
Dankner, Nathan (NIH/NIMH) [F] wrote:
> Hi all,
>
> I am attempting to create a qdec.table.dat file, and have been unable to find
> a way to paste my data into it in a way that will make it readable. When I
> paste
Hi all,
I am attempting to create a qdec.table.dat file, and have been unable to find a
way to paste my data into it in a way that will make it readable. When I paste
it in qdec always outputs an error when trying to open it, even if visually the
file appears to be correct. Is there an easy w
Hello-
I'm getting a rather nondescript message of "Error loading the data
table" when I try to load my qdec.table.dat into the qdec GUI. I've
tried using Excel, OpenOffice Calc, OpenOffice Wordprocessor, and Kate
to save my table as a tab-delimited text file. Nothing works. Any
suggestions o
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