Re: [Freesurfer] Qdec "create stats tables" error

2014-09-12 Thread Markus Gschwind
Dear Martin, Actually, I found that it doesn't like the ~/ for /home/username When replacing the first line in the qdec.table.dat SUBJECTS_DIR=/home/username/... and also export the SUBJECTS_DIR in the terminal with the foll path, it works nicley! Thanks again! Markus 2014-09-12 22:06 GMT+02:0

Re: [Freesurfer] Qdec "create stats tables" error

2014-09-12 Thread Markus Gschwind
Hi Martin! Thanks! Yes, indeed typing in the command export SUBJECTS_DIR= before starting qdec solved the first problem... there are others to follow... When now writing the table stats file: Data table loading completed successfully. SUBJECTS_DIR is '~/Documents/ARNAUD/' mkdir -p /home/user/D

Re: [Freesurfer] Qdec "create stats tables" error

2014-09-12 Thread Martin Reuter
Hi Markus, maybe for some weird reason it uses the subjects_dir from the environment variable instead of the qdec file (that would probably be a bug). If that's the case, try setting the subject dir on the command line before starting qdec: setenv SUBJECTS_DIR ~/Documents/ARNAUD/ (or the full

[Freesurfer] Qdec "create stats tables" error

2014-09-12 Thread Markus Gschwind
Dear all, I am trying to make work Qdec on my system ubuntu 12.04. freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0 After I have loaded my qdec.table.dat and renamed the analysis folder , when I then try to create the "stats tables", I get an error and it blocks at 20% of the waiting bar. Dat