Hi Markus,
maybe for some weird reason it uses the subjects_dir from the
environment variable instead of the qdec file (that would probably be a
bug). If that's the case, try setting the subject dir on the command
line before starting qdec:
setenv SUBJECTS_DIR ~/Documents/ARNAUD/
(or the full path). If you use a bash shell, use the equivalent export
command for that.
Best, Martin
On 09/12/2014 03:30 PM, Markus Gschwind wrote:
Dear all,
I am trying to make work Qdec on my system ubuntu 12.04.
freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0
After I have loaded my qdec.table.dat and renamed the analysis folder
, when I then try to create the "stats tables", I get an error and it
blocks at 20% of the waiting bar.
Data table loading completed successfully.
SUBJECTS_DIR is '~/Documents/ARNAUD/'
mkdir -p /usr/local/freesurfer/subjects/qdec/stats_tables/
mkdir: cannot create directory
`/usr/local/freesurfer/subjects/qdec': Permission denied
ERROR: In
/usr/pubsw/packages/KWWidgets/CVS-vtk560/KWWidgets/vtkKWTkUtilities.cxx,
line 230
vtkKWQdecApp (0x289a94e0):
Script:
vtkTemp2 GenerateStatsDataTables
Returned Error on line 1:
Uncaught exception: command failed: mkdir -p
/usr/local/freesurfer/subjects/qdec/stats_tables/
Stack trace:
Uncaught exception: command failed: mkdir -p
/usr/local/freesurfer/subjects/qdec/stats_tables/
while executing
"vtkTemp2 GenerateStatsDataTables"
It seems that it tries to write into the default SUBJECT_DIR, thing
that I do not understand as I put the actual SUBJECT_DIR in the top
line of qdec.table.dat (and it is correctly recognized in the qdec
window SUBJECTS_DIR).
How could I come around that problem?
Thanks in advance!
Markus
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--
Dr. Martin Reuter
Instructor in Neurology
Harvard Medical School
Assistant in Neuroscience
Dept. of Radiology, Massachusetts General Hospital
Dept. of Neurology, Massachusetts General Hospital
Research Affiliate
Computer Science and Artificial Intelligence Lab,
Dept. of Electrical Engineering and Computer Science,
Massachusetts Institute of Technology
A.A.Martinos Center for Biomedical Imaging
149 Thirteenth Street, Suite 2301
Charlestown, MA 02129
Phone: +1-617-724-5652
Email:
mreu...@nmr.mgh.harvard.edu
reu...@mit.edu
Web : http://reuter.mit.edu
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