Re: [Freesurfer] QA Cortex

2009-10-06 Thread Bruce Fischl
Hi Jeff, just for the cortex I would run: tkmedit $subject norm.mgz lh.white -aux-surface rh.white -aux wm.mgz and check to see if the gray/white and pial surfaces are accurate. Don't worry about the cortex labels in the aseg - it's not what we use cheers Bruce On Tue, 6 Oct 2009, Jeff Sadino

[Freesurfer] QA Cortex

2009-10-06 Thread Jeff Sadino
Hello, I want to do a quality check of the cortex for 140 subjects, as far as making sure it is segmented correctly. What files are the best ones to load up to check this in fs 3? If I load the aseg.mgz file up in tkmedit and look at the cortical regions, there are some regions where there is no