Hi Jeff, just for the cortex I would run:
tkmedit $subject norm.mgz lh.white -aux-surface rh.white -aux wm.mgz and check to see if the gray/white and pial surfaces are accurate. Don't worry about the cortex labels in the aseg - it's not what we use cheers Bruce On Tue, 6 Oct 2009, Jeff Sadino wrote: > Hello, > I want to do a quality check of the cortex for 140 subjects, as far as > making sure it is segmented correctly. What files are the best ones to load > up to check this in fs 3? If I load the aseg.mgz file up in tkmedit and > look at the cortical regions, there are some regions where there is no > cortex at all. Would I make the edits on this file, or is there some other > file that would be better to use. > > Thank you, > Jeff Sadino > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
