Re: [Freesurfer] Problems with GM segmentation -- How to solve it

2018-12-12 Thread Rosalia Dacosta Aguayo
External Email - Use Caution Hi Bruce, Already sent: ftp> put 013.tar.gz local: 013.tar.gz remote: 013.tar.gz 200 PORT command successful. Consider using PASV. 150 Ok to send data. 226 Transfer complete. 223104380 bytes sent in 808.49 secs (269.4852 kB/s) ftp> On Wed, Dec 12, 20

Re: [Freesurfer] Problems with GM segmentation -- How to solve it

2018-12-12 Thread Rosalia Dacosta Aguayo
External Email - Use Caution Hi Bruce, Thank you for your reply. I am sending now a file called 013.tar.gz via ftp. And this is not the worst...there are other with more regions that have not been considered in the segmentation process. I would like to know how could I cope with G

Re: [Freesurfer] Problems with GM segmentation -- How to solve it

2018-12-11 Thread Bruce Fischl
Hi Rosalia if you upload an example with voxel coordinates of where you see problems we will take a look cheers Bruce On Tue, 11 Dec 2018, Rosalia Dacosta Aguayo wrote: External Email - Use Caution Dear Free Surfer team and Bruce, I have been doing well editing the skull s

[Freesurfer] Problems with GM segmentation -- How to solve it

2018-12-11 Thread Rosalia Dacosta Aguayo
External Email - Use Caution Dear Free Surfer team and Bruce, I have been doing well editing the skull stripping, and using control points to improve white matter segmentation. Furthermore, the few participants I had problems with due to large ventricles were solved using the flag