Try adding -oc 0 0 0 to the mri_convert command line
On 2/2/18 7:27 AM, Helen Beaumont wrote:
> I am using the command
> mri_convert -at transforms/talairach.xfm brain.mgz brain_in_tal.nii.gz
>
> to convert a native-space skull-stripped T1 image to talairach space. I used
> recon-all to generat
I am using the command
mri_convert -at transforms/talairach.xfm brain.mgz brain_in_tal.nii.gz
to convert a native-space skull-stripped T1 image to talairach space. I used
recon-all to generate the transform matrix, and the segmentation and everything
look good. But the T1_in_talairach image is