I am using the command mri_convert -at transforms/talairach.xfm brain.mgz brain_in_tal.nii.gz
to convert a native-space skull-stripped T1 image to talairach space. I used recon-all to generate the transform matrix, and the segmentation and everything look good. But the T1_in_talairach image is not good - the brains are ending up different sizes, and frequently have the posterior chopped off. Please what am I doing wrong? Should I be applying the inverse of the transform? Helen Beaumont PhD University of Manchester _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
