oh, if the lh annot is being loaded onto the rh surface, then that will
definitely create the tye-died appearance. Maybe Ruopeng can weigh in on
the freeview issue.
doug
On 12/18/2013 04:53 PM, Laura Taylor wrote:
> Hi Douglas,
>
> I would go to the annotation drop down menu in freeview, selec
Hi Douglas,
I would go to the annotation drop down menu in freeview, select
l/rh.aparc.a2009s.annot and then it would freeze. I can't seem to
reproduce that problem today, but for every subject that I load an
annotation for now, the rh annotation loads properly, but the lh annotation
loads onto t
For the subject that you were not able to load the annot, did you check
the recon-all log file? Did recon-all complete properly?
doug
On 12/17/2013 01:35 PM, Laura Taylor wrote:
> Hi again, Douglas and freesurfer experts.
>
> Unfortunately my problem cannot be explained by having made manual
>
So when you say you cannot load it, what do you mean?
doug
On 12/17/2013 02:55 PM, Laura Taylor wrote:
> Hi Douglas,
>
> I checked the status of each subject once recon-all was completed (by
> looking in the terminal window before I closed it). Each of my
> roughly 90 subects had the message
Hi Douglas,
I checked the status of each subject once recon-all was completed (by
looking in the terminal window before I closed it). Each of my roughly 90
subects had the message "*recon-all -s* subjectID *finished without
error*at date and time".
When I look at the recon-all.log file the same
Hi again, Douglas and freesurfer experts.
Unfortunately my problem cannot be explained by having made manual edits
and then not finishing recon-all. When I load subjects that I did not
manually edit, I am either unable to load an annotation file (specifically
r/lh.aparc.a2009s.annot) at all, or I
Hi, yes thank you both. That is exactly what the problem was.
Laura
On Tue, Dec 10, 2013 at 11:12 AM, Douglas N Greve wrote:
> Yep, looks like your annot is out of sync with the surfaces
>
> On 12/10/2013 01:51 PM, Chris Watson wrote:
> > I've seen this happen after making manual edits and th
Yep, looks like your annot is out of sync with the surfaces
On 12/10/2013 01:51 PM, Chris Watson wrote:
> I've seen this happen after making manual edits and then not finishing
> a re-run of recon-all.
> Chris
>
> On 12/10/2013 02:00 PM, Laura Taylor wrote:
>> Hi,
>>
>> I'm trying to load lh.apar
I've seen this happen after making manual edits and then not finishing a
re-run of recon-all.
Chris
On 12/10/2013 02:00 PM, Laura Taylor wrote:
Hi,
I'm trying to load lh.aparc.a2009s.annot onto the lh pial surface of a
subject. When I use the freeview gui and select lh.aparc.a2009s.annot
un
