Hi Koen,
Thanks, this solved the problem.
Ed
On 4 Apr 2012, at 19:21, Koen Van Leemput wrote:
> Hi Ed,
>
> It seems that the 5.1.0 release for the Mac was composed two days
> after the one for Linux, and during exactly those two days one of us
> made a change to the file $FREESURFER_HOME/FreeSu
Hi Ed,
It seems that the 5.1.0 release for the Mac was composed two days
after the one for Linux, and during exactly those two days one of us
made a change to the file $FREESURFER_HOME/FreeSurferColorLUT.txt.
To correct this issue, please make a back-up copy of your
FreeSurferColorLUT.txt file, a
I have downloaded the file
freesurfer-Darwin-leopard-i686-stable-pub-v51.0..dmg,
date 26/05/2011.
Ed
On 4 Apr 2012, at 13:09, Koen Van Leemput wrote:
> OK, I see why this is not working. We've been changing some name
> conventions in our internal FreeSurfer repository after the public
> release
OK, I see why this is not working. We've been changing some name
conventions in our internal FreeSurfer repository after the public
release of version 5.1, and somehow you managed to get an incompletely
updated version.
It appears from
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.1.0 tha
Hi Koen,
No worries.
The result of grep is:
500 right_CA2_3 17 85 136 0
550 left_CA2_3 17 85 137 0
Ed
On 4 Apr 2012, at 12:41, Koen Van Leemput wrote:
> Hi Ed,
>
> Can you please do
>
> "grep _CA2 $FREESURFER_HOME/FreeSurferColorLUT.txt"
>
> and let me know wha
Hi Ed,
Can you please do
"grep _CA2 $FREESURFER_HOME/FreeSurferColorLUT.txt"
and let me know what the result is?
Thanks, and sorry this seems so difficult to sort out.
Koen
On Wed, Apr 4, 2012 at 6:14 AM, Ed Gronenschild
wrote:
> Hi Koen,
>
> As already mentioned, I'm using v5.1.0, Mac Inte
Hi Koen,
As already mentioned, I'm using v5.1.0, Mac Intel
Leopard version.
The voxel values of posterior_left_CA2-3.mgz and
posterior_right_CA2-3.mgz are between 0 and 255,
if that is what you mean by "results".
By the way: I always get the 8 lines with "invalid
drawable" messages from freeview.
Hi Ed,
What version of the FreeSurfer build are you using?
Also, could you please let me know what the result is of "ls
posterior_left_CA2*"?
Thanks,
Koen
On Tue, Mar 27, 2012 at 8:29 AM, Ed Gronenschild
wrote:
> Hi,
>
> I followed the instructions to visualize the hippocampal subfield segm
Hi,
I followed the instructions to visualize the hippocampal subfield segmentation
by entering the command (in the subject's mri directory)
freeview nu.mgz \
> -p-labels posterior_left_* posterior_Left-Hippocampus.mgz \
> -p-labels posterior_right_* posterior_Right-Hippocampus.mgz \
> -p-pr
