I have downloaded the file freesurfer-Darwin-leopard-i686-stable-pub-v51.0..dmg, date 26/05/2011.
Ed On 4 Apr 2012, at 13:09, Koen Van Leemput wrote: > OK, I see why this is not working. We've been changing some name > conventions in our internal FreeSurfer repository after the public > release of version 5.1, and somehow you managed to get an incompletely > updated version. > > It appears from > ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.1.0 that some > versions for the Mac were updated *after* the release date (24 May > 2011), so I'll check with the engineers what exactly happened. Do you > remember which file you downloaded? > > Thanks, > > Koen > > > > On Wed, Apr 4, 2012 at 6:59 AM, Ed Gronenschild > <ed.gronensch...@np.unimaas.nl> wrote: >> Hi Koen, >> >> No worries. >> The result of grep is: >> >> 500 right_CA2_3 17 85 136 0 >> 550 left_CA2_3 17 85 137 0 >> >> Ed >> >> >> On 4 Apr 2012, at 12:41, Koen Van Leemput wrote: >> >>> Hi Ed, >>> >>> Can you please do >>> >>> "grep _CA2 $FREESURFER_HOME/FreeSurferColorLUT.txt" >>> >>> and let me know what the result is? >>> >>> Thanks, and sorry this seems so difficult to sort out. >>> >>> Koen >>> >>> >>> On Wed, Apr 4, 2012 at 6:14 AM, Ed Gronenschild >>> <ed.gronensch...@np.unimaas.nl> wrote: >>>> >>>> Hi Koen, >>>> >>>> As already mentioned, I'm using v5.1.0, Mac Intel >>>> Leopard version. >>>> The voxel values of posterior_left_CA2-3.mgz and >>>> posterior_right_CA2-3.mgz are between 0 and 255, >>>> if that is what you mean by "results". >>>> By the way: I always get the 8 lines with "invalid >>>> drawable" messages from freeview. >>>> >>>> Ed >>>> >>>> >>>> On 3 Apr 2012, at 21:29, Koen Van Leemput wrote: >>>> >>>>> Hi Ed, >>>>> >>>>> What version of the FreeSurfer build are you using? >>>>> >>>>> Also, could you please let me know what the result is of "ls >>>>> posterior_left_CA2*"? >>>>> >>>>> Thanks, >>>>> >>>>> Koen >>>>> >>>>> >>>>> >>>>> On Tue, Mar 27, 2012 at 8:29 AM, Ed Gronenschild >>>>> <ed.gronensch...@np.unimaas.nl> wrote: >>>>>> >>>>>> >>>>>> Hi, >>>>>> >>>>>> I followed the instructions to visualize the hippocampal subfield >>>>>> segmentation >>>>>> by entering the command (in the subject's mri directory) >>>>>> >>>>>> freeview nu.mgz \ >>>>>>> >>>>>>> >>>>>>> -p-labels posterior_left_* posterior_Left-Hippocampus.mgz \ >>>>>>> -p-labels posterior_right_* posterior_Right-Hippocampus.mgz \ >>>>>>> -p-prefix posterior_ -p-lut $FREESURFER_HOME/ >>>>>>> FreeSurferColorLUT.txt >>>>>> >>>>>> >>>>>> >>>>>> and got the following messages: >>>>>> >>>>>> 2012-03-27 11:54:37.043 freeview.bin[34414:907] invalid drawable >>>>>> 2012-03-27 11:54:37.083 freeview.bin[34414:907] invalid drawable >>>>>> 2012-03-27 11:54:37.154 freeview.bin[34414:907] invalid drawable >>>>>> 2012-03-27 11:54:37.156 freeview.bin[34414:907] invalid drawable >>>>>> 2012-03-27 11:54:37.168 freeview.bin[34414:907] invalid drawable >>>>>> 2012-03-27 11:54:37.170 freeview.bin[34414:907] invalid drawable >>>>>> 2012-03-27 11:54:37.182 freeview.bin[34414:907] invalid drawable >>>>>> 2012-03-27 11:54:37.184 freeview.bin[34414:907] invalid drawable >>>>>> QObject::connect: Connecting from QAbstractButton::toggled >>>>>> (bool) to >>>>>> COMPAT slot (QGroupBox::setShown(bool)) >>>>>> QObject::connect: Connecting from QAbstractButton::toggled >>>>>> (bool) to >>>>>> COMPAT slot (QGroupBox::setShown(bool)) >>>>>> CTABrgbAtIndexi: index -1 was OOB >>>>>> CTABrgbAtIndexi: index -1 was OOB >>>>>> Can not find index for color name left_CA2-3 >>>>>> CTABrgbAtIndexi: index -1 was OOB >>>>>> CTABrgbAtIndexi: index -1 was OOB >>>>>> CTABrgbAtIndexi: index -1 was OOB >>>>>> Can not find index for color name right_CA2-3 >>>>>> CTABrgbAtIndexi: index -1 was OOB >>>>>> >>>>>> Nothing was shown on top of nu.mgz. All the left and righ >>>>>> posterior >>>>>> files >>>>>> are present. >>>>>> >>>>>> (Mac OS X 10.6.8, FreeSurfer version 5.1.0) >>>>>> >>>>>> Cheers, >>>>>> Ed >>>>>> _______________________________________________ >>>>>> Freesurfer mailing list >>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>> >>>>>> >>>>>> The information in this e-mail is intended only for the person >>>>>> to whom >>>>>> it >>>>>> is >>>>>> addressed. If you believe this e-mail was sent to you in error >>>>>> and the >>>>>> e-mail >>>>>> contains patient information, please contact the Partners >>>>>> Compliance >>>>>> HelpLine at >>>>>> http://www.partners.org/complianceline . If the e-mail was >>>>>> sent to you >>>>>> in >>>>>> error >>>>>> but does not contain patient information, please contact the >>>>>> sender and >>>>>> properly >>>>>> dispose of the e-mail. >>>>>> >>>> >> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
