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From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Douglas N. Greve
Sent: Tuesday, April 20, 2021 3:06 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Native volume to fs_average surface
use the filtered func data. reg.lta the outpu
Freesurfer support list ; Greve, Douglas
N.,Ph.D.
Subject: Re: [Freesurfer] Native volume to fs_average surface
Hi Mason
Pretty much all surfaces of a single subject/hemi have the same topology
(number of vertices/faces/etc…), so if you map to any of them you map to all of
them.
As for
go vol->surf, then the
sphere.reg to go surf->surf
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Mason Wells
Sent: Monday, April 19, 2021 12:16 PM
To: Freesurfer support list ; Greve, Douglas
N.,Ph.D.
Subject: Re: [Freesurfer] Native volume to fs_average s
vard.edu
on behalf of Fischl, Bruce
Sent: Monday, April 19, 2021 5:06 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Native volume to fs_average surface
Hi Mason
I should have read to the end of my inbox before replying – Doug is the expert
in this so I would definitely follow
edu
On Behalf Of Mason Wells
Sent: Monday, April 19, 2021 11:50 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] Native volume to fs_average surface
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Hi Bruce,
Thanks for the reply. Would you agree this is the opti
;
freesurfer-boun...@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Native volume to fs_average surface
Hi Mason
Yes, you can use mri_vol2surf to go native vol->native surf, then mri_surf2surf
to go native surf->group surf
Cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.ed
r-boun...@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Native volume to fs_average surface
External Email - Use Caution
External Email - Use Caution
HI Matt,
Thanks for the reply. Are you suggesting I go native volume > native surface >
fs_average? If so, can you recommend the b
on behalf of Douglas N. Greve
Sent: Monday, April 19, 2021 2:57 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Native volume to fs_average surface
External email to Cardiff University - Take care when replying/opening
attachments or links.
Nid ebost mewnol o Brifysgol Caerdydd
dd.ac.uk>
Ffôn: 02920 879628
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Glasser, Matthew
Sent: Monday, April 19, 2021 10:51 AM
To: Freesurfer support list ;
freesurfer-boun...@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Native volume to fs_av
If you have the data in the native functional space, then just
mri_vol2surf --mov func.nii --hemi rh --reg reg.lta --trgsubject
fsaverage --projfrac 0.5 --o rh.func.fsa.mgz
On 4/19/2021 5:23 AM, Mason Wells wrote:
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Hi
: on behalf of Mason Wells
Reply-To: Freesurfer support list
Date: Monday, April 19, 2021 at 4:45 AM
To: Freesurfer support list ,
"freesurfer-boun...@nmr.mgh.harvard.edu"
Subject: Re: [Freesurfer] Native volume to fs_average surface
External Email - Use Caution
HI Mat
April 19, 2021 10:27 AM
To: Freesurfer support list ;
freesurfer-boun...@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Native volume to fs_average surface
External email to Cardiff University - Take care when replying/opening
attachments or links.
Nid ebost mewnol o Brifysgol Caerdydd yw hwn - C
support list
Date: Monday, April 19, 2021 at 4:23 AM
To: Freesurfer support list ,
"freesurfer-boun...@nmr.mgh.harvard.edu"
Subject: [Freesurfer] Native volume to fs_average surface
External Email - Use Caution
Hi experts,
I have some fMRI data that I have pre-processed
External Email - Use Caution
Hi experts,
I have some fMRI data that I have pre-processed in Feat. I want to resample a
single subject's data to the fs_average surface but unsure of the most optimal
way of doing this. At present I am warping the functional data to the MNI brain
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