Hi John,
mri_glmfit-sim actually runs on the GLM dir created when you run
mri_glmfit (it does not take a separate directory). It applies the
correction to all the contrasts in the GLM dir, so you just need to set
up a GLM with the contrast you want to correct.
doug
John Richey wrote:
> Dear fr
Dear freesurfer experts,
I have a question about the conceptual use of mri_glmfit-sim. I wish to
apply permutation based cluster-correction to my between-groups results
(patients vs controls), and it is not clear to me which volume should be
the input for this type of simulation.
For example,
