Re: [Freesurfer] Mapping a custom measure to the pial surface of fsaverage

2018-11-07 Thread ts+ml
External Email - Use Caution Thanks for your time and the clarification. Tim -- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, G

Re: [Freesurfer] Mapping a custom measure to the pial surface of fsaverage

2018-11-07 Thread Greve, Douglas N.,Ph.D.
On 10/25/2018 11:31 AM, ts...@rcmd.org wrote: > External Email - Use Caution > > Dear Douglas, > > thanks for your answer. > > Did you by any chance mean mris_preproc instead of preproc-sess? The latter > seems to have no --meas flag according to the help (and a quick grep through > th

Re: [Freesurfer] Mapping a custom measure to the pial surface of fsaverage

2018-10-25 Thread ts+ml
External Email - Use Caution Dear Douglas, thanks for your answer. Did you by any chance mean mris_preproc instead of preproc-sess? The latter seems to have no --meas flag according to the help (and a quick grep through the script file). I ended up placing the curv files in /s

Re: [Freesurfer] Mapping a custom measure to the pial surface of fsaverage

2018-10-23 Thread Greve, Douglas N.,Ph.D.
You can use preproc-sess and specify the --meas flag. Run with --help for more info. On 10/18/18 2:08 PM, ts...@rcmd.org wrote: > External Email - Use Caution > > Dear FreeSurfer experts, > > I have created a custom measure on the pial surface of a number of subjects, > and I would like

[Freesurfer] Mapping a custom measure to the pial surface of fsaverage

2018-10-18 Thread ts+ml
External Email - Use Caution Dear FreeSurfer experts, I have created a custom measure on the pial surface of a number of subjects, and I would like to map the data to the fsaverage subject. (By custom measure I mean something like 'area' or 'curv', i.e., one scalar value per sur