Re: [Freesurfer] MRIread and RAS orientation

2024-02-07 Thread Douglas N. Greve
...@nmr.mgh.harvard.edu on behalf of Iglesias Gonzalez, Juan E. *Date: *Tuesday, January 23, 2024 at 9:14 AM *To: *Freesurfer support list *Subject: *Re: [Freesurfer] MRIread and RAS orientation *External Email - Use Caution * I’m pretty sure that the Matlab code does not reorient. Cheers, Eugenio

Re: [Freesurfer] MRIread and RAS orientation

2024-01-23 Thread Fotiadis, Panagiotis
behalf of Fischl, Bruce R.,PHD Date: Tuesday, January 23, 2024 at 12:26 PM To: Freesurfer support list Subject: Re: [Freesurfer] MRIread and RAS orientation Does fslorient resample or just change the ras2vox? From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Fotiadis, Panagiotis Sent

Re: [Freesurfer] MRIread and RAS orientation

2024-01-23 Thread Fischl, Bruce R.,PHD
Does fslorient resample or just change the ras2vox? From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Fotiadis, Panagiotis Sent: Tuesday, January 23, 2024 12:11 PM To: Freesurfer support list Subject: Re: [Freesurfer] MRIread and RAS orientation External Email - Use Caution

Re: [Freesurfer] MRIread and RAS orientation

2024-01-23 Thread Huang, Yujing
lf of Fischl, Bruce R.,PHD mailto:bfis...@mgh.harvard.edu>> Date: Tuesday, January 23, 2024 at 11:06 AM To: Freesurfer support list mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: Re: [Freesurfer] MRIread and RAS orientation I agree with Eugenio – it doesn’t do any resampling. Just

Re: [Freesurfer] MRIread and RAS orientation

2024-01-23 Thread Fotiadis, Panagiotis
Subject: Re: [Freesurfer] MRIread and RAS orientation I agree with Eugenio – it doesn’t do any resampling. Just reads in the data as is Cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Huang, Yujing Sent: Tuesday, January 23, 2024 8:49 AM To: Freesurfer support list

Re: [Freesurfer] MRIread and RAS orientation

2024-01-23 Thread Fischl, Bruce R.,PHD
I agree with Eugenio - it doesn't do any resampling. Just reads in the data as is Cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Huang, Yujing Sent: Tuesday, January 23, 2024 8:49 AM To: Freesurfer support list Subject: Re: [Freesurfer] MRIread and RAS orient

Re: [Freesurfer] MRIread and RAS orientation

2024-01-23 Thread Fotiadis, Panagiotis
-boun...@nmr.mgh.harvard.edu on behalf of Iglesias Gonzalez, Juan E. Date: Tuesday, January 23, 2024 at 9:14 AM To: Freesurfer support list Subject: Re: [Freesurfer] MRIread and RAS orientation External Email - Use Caution I’m pretty sure that the Matlab code does not reorient. Cheers, Eugenio

Re: [Freesurfer] MRIread and RAS orientation

2024-01-23 Thread Iglesias Gonzalez, Juan E.
starts from 1. Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Fotiadis, Panagiotis Sent: Tuesday, January 23, 2024 1:54 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] MRIread and RAS orientation External Email - Use Caution Hello, I have two

Re: [Freesurfer] MRIread and RAS orientation

2024-01-23 Thread Huang, Yujing
Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Fotiadis, Panagiotis Sent: Tuesday, January 23, 2024 1:54 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] MRIread and RAS orientation External Email - Use Caution Hello, I have two nifti files that are bo

[Freesurfer] MRIread and RAS orientation

2024-01-22 Thread Fotiadis, Panagiotis
External Email - Use Caution Hello, I have two nifti files that are both in the same MNI space, the former of which is saved in LAS orientation while the other in RAS orientation (as showcased by the “Orientation” field of mri_info). I just wanted to verify: When loading both o