Re: [Freesurfer] Loading new data into Freesurfer

2010-03-02 Thread Bruce Fischl
are there really all those '*'s in the name? And the ^? Those are probably messing things up. On Tue, 2 Mar 2010, Janani Dhinakaran wrote: > Yes, just did. > This is what I got. > > s0964...@cric-0012:~/Desktop/Newdata/RAW_DATA/1_1$ mri_convert > Desktop/Newdata/RAW_DATA/1_1/**^**_1_1_1

Re: [Freesurfer] Loading new data into Freesurfer

2010-03-02 Thread Janani Dhinakaran
Yes, just did. This is what I got. s0964...@cric-0012:~/Desktop/Newdata/RAW_DATA/1_1$ mri_convert Desktop/Newdata/RAW_DATA/1_1/**^**_1_1_1.img Desktop/Newdata/JS/mri/orig/001.mgz mri_convert Desktop/Newdata/RAW_DATA/1_1/**^**_1_1_1.img Desktop/Newdata/JS/mri/orig/001.mgz $Id: mri_c

Re: [Freesurfer] Loading new data into Freesurfer

2010-03-02 Thread Bruce Fischl
did you try giving it the .img file as input and the .mgz as output? On Tue, 2 Mar 2010, Janani Dhinakaran wrote: > Hello to everyone! > Hope the new month is bringing better weather to all of you. > > I am trying to load new data. I cd-d to the location of the files (.hdr and > .img). Now I am

[Freesurfer] Loading new data into Freesurfer

2010-03-02 Thread Janani Dhinakaran
Hello to everyone! Hope the new month is bringing better weather to all of you. I am trying to load new data. I cd-d to the location of the files (.hdr and .img). Now I am trying to convert the data. It doesn't recognise the information. I've manually created the files JS, MRI, and Orig within to