did you try giving it the .img file as input and the .mgz as output? On Tue, 2 Mar 2010, Janani Dhinakaran wrote:
> Hello to everyone! > Hope the new month is bringing better weather to all of you. > > I am trying to load new data. I cd-d to the location of the files (.hdr and > .img). Now I am trying to convert the data. It doesn't recognise the > information. I've manually created the files JS, MRI, and Orig within to > allocate an appropriate path for it. Here is a copy of what I did. Please > let me knwo what I need to do. > > Thank you! > > s0964...@cric-0012:~/Desktop/Newdata/RAW_DATA$ cd 1_1 > s0964...@cric-0012:~/Desktop/Newdata/RAW_DATA/1_1$ mri_convert > /Desktop/Newdata/RAW_DATA/1_1 /Desktop/Newdata/JS > mri_convert /Desktop/Newdata/RAW_DATA/1_1 /Desktop/Newdata/JS > mri_convert: can't determine type of output volume > s0964...@cric-0012:~/Desktop/Newdata/RAW_DATA/1_1$ mri_convert > /Desktop/Newdata/RAW_DATA/1_1 /Desktop/Newdata/JS/001.mgz > mri_convert /Desktop/Newdata/RAW_DATA/1_1 /Desktop/Newdata/JS/001.mgz > file not found or unknown file type for file /Desktop/Newdata/RAW_DATA/1_1 > s0964...@cric-0012:~/Desktop/Newdata/RAW_DATA/1_1$ mri_convert > /Desktop/Newdata/RAW_DATA/1_1 /Desktop/Newdata/JS/mri/orig/001.mgz > mri_convert /Desktop/Newdata/RAW_DATA/1_1 > /Desktop/Newdata/JS/mri/orig/001.mgz > file not found or unknown file type for file /Desktop/Newdata/RAW_DATA/1_1 > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
