Re: [Freesurfer] Hippocampus subfield segmentation error on Ubuntu 20.04.1 LTS

...@nmr.mgh.harvard.edu on behalf of Ishi Tandon AIB, Jaipur Date: Thursday, March 4, 2021 at 1:17 AM To: Freesurfer support list Subject: Re: [Freesurfer] Hippocampus subfield segmentation error on Ubuntu 20.04.1 LTS External Email - Use Caution Yes, the same error occurred again. It

Re: [Freesurfer] Hippocampus subfield segmentation error on Ubuntu 20.04.1 LTS

External Email - Use Caution Hello Ishi, After reviewing this thread, I made a *.deb installer from the 7.1.1 release.  I will send a download link to your private email so you can try it if you like.  You will need sudo privileges to run it.  If you try it, I suggest you first

Re: [Freesurfer] Hippocampus subfield segmentation error on Ubuntu 20.04.1 LTS

External Email - Use Caution Yes, the same error occurred again. It would be great if someone from the dev team could help me resolve it. On Thu, Mar 4, 2021 at 11:29 AM Horsng Junn wrote: > External Email - Use Caution > > You mean the following error occurred again?

Re: [Freesurfer] Hippocampus subfield segmentation error on Ubuntu 20.04.1 LTS

External Email - Use Caution You mean the following error occurred again? libncurses.so.5: cannot open shared object file: No such file or directory Sorry but I ran out of ideas. Could anyone from the FreeSurfer dev team chime in? Please delete the file you just created with the

Re: [Freesurfer] Hippocampus subfield segmentation error on Ubuntu 20.04.1 LTS

External Email - Use Caution Thanks alot. That seems to have executed without any errors. But segmentHA_T1.sh

Re: [Freesurfer] Hippocampus subfield segmentation error on Ubuntu 20.04.1 LTS

External Email - Use Caution Then installing libncurses5-dev doesn't seem like the solution we've been seeking after all. Could you try this instead? sudo ln -s /usr/lib/x86_64-linux-gnu/libncurses.so.6.2 /usr/lib/x86_64-linux-gnu/libncurses.so.5 Regards, Horsng > On Mar 4, 2

Re: [Freesurfer] Hippocampus subfield segmentation error on Ubuntu 20.04.1 LTS

External Email - Use Caution Hi Ishi, The results suggest that libncurses5-dev isn't installed at all. (Listed files are all from the default libncurses 6) In your previous mail you said that: >> Also, I have tried sudo apt-get install libncurses5-dev. But that doesn't >> seem

Re: [Freesurfer] Hippocampus subfield segmentation error on Ubuntu 20.04.1 LTS

External Email - Use Caution Hi Ishi, Following are what I gathered: - You're running Freesurfer 7.1.1 on an ubuntu 20.04 box - Ubuntu 20.04 has libncurses 6 installed as default - Freesurfer 7.1.1 is linked against libncurses 5 - So previously you were advised to install libncur

Re: [Freesurfer] Hippocampus subfield segmentation error on Ubuntu 20.04.1 LTS

External Email - Use Caution Hello experts, With reference to my previous email, I am attaching the log file of segmentHA_T1.sh

Re: [Freesurfer] Hippocampus subfield segmentation error on Ubuntu 20.04.1 LTS

External Email - Use Caution Hello, Thanks for those suggestions. I already seem to have modified my bashrc with the same command. But I think running as root was a problem. But that's weird as earlier none of the Fs commands were executed without root. But now that seems to wor

Re: [Freesurfer] Hippocampus subfield segmentation error on Ubuntu 20.04.1 LTS

External Email - Use Caution And you seem to be running FreeSurfer as root. Since that could complicate matters, could you run it as a normal user? Best, Horsng > On Feb 24, 2021, at 9:36 AM, Horsng Junn wrote: > > Hi Ishi, > > I'm actually not a FreeSurfer developer and this

Re: [Freesurfer] Hippocampus subfield segmentation error on Ubuntu 20.04.1 LTS

External Email - Use Caution Hi Ishi, I'm actually not a FreeSurfer developer and this question seems beyond me, but my googling leads to this page: https://secure-web.cisco.com/1tvdf5d8d-n_4_yvtpnDy1tW-h4qQnq2_ZkoCU5wZomtFsWZ-CDUCe9hdZND8pvg-6Zs954WFqOc9uonDsuGXWWb2s4TMIIXYq9XIL

Re: [Freesurfer] Hippocampus subfield segmentation error on Ubuntu 20.04.1 LTS

External Email - Use Caution Hi Ishi, You apparently omitted an "n": it must be libncurses5-dev (please note the n after lib). And please try to keep previous correspondences intact, as otherwise the devs must hunt the mail archive for the detail. Best, Horsng > On Feb 23, 20

[Freesurfer] Hippocampus subfield segmentation error on Ubuntu 20.04.1 LTS

External Email - Use Caution Hello experts, In response to the previous email about matlab installation error while attempting to use hippocampal subfields. I tried the following command as suggested by you :- sudo apt-get install libcurses5-dev But I get the following error :-

Re: [Freesurfer] Hippocampus subfield segmentation error on Ubuntu 20.04.1 LTS

subfield segmentation error on Ubuntu 20.04.1 LTS External Email - Use Caution Hello experts, I have recently installed freesurfer on Ubuntu 20 (which is on virtualbox). I want to use hippocampal subfield segmentation in freesurfer. I have installed MATLAB run time (2014b) through the