Follow the same procedures that you used to get the input (--y) to
mri_glmfit, then run
mri_segstats --seg cache.th13.abs.sig.cluster.mgh --i y.new.mgh
--excludeid 0 --avgwf avg.thickness.dat
The avg.thickness.dat will be a file with a row for each subject and a
column for each cluster
doug
Hi Freesurfer Mailing List,
I have just completed a GLM analysis with monte carlo correction and now
have my "cache.th13.abs.sig.cluster.mgh" files showing the significant
clusters for a specific contrast. I would now like to get mean cortical
thickness values for these ROIs in another unrelat
