Follow the same procedures that you used to get the input (--y) to mri_glmfit, then run
mri_segstats --seg cache.th13.abs.sig.cluster.mgh --i y.new.mgh --excludeid 0 --avgwf avg.thickness.dat The avg.thickness.dat will be a file with a row for each subject and a column for each cluster doug On 12/15/2015 06:30 PM, Bronwyn Overs wrote: > Hi Freesurfer Mailing List, > > I have just completed a GLM analysis with monte carlo correction and > now have my "cache.th13.abs.sig.cluster.mgh" files showing the > significant clusters for a specific contrast. I would now like to get > mean cortical thickness values for these ROIs in another unrelated MRI > sample. What is the simplest means of mapping these clusters to my > other sample so that I can extract the stats? > > Kind regards, > > Bronwyn Overs > Research Assistant > > Neuroscience Research Australia > > Neuroscience Research Australia > Margarete Ainsworth Building > Barker Street Randwick Sydney NSW 2031 Australia > *M* 0411 308 769 *T* +61 2 9399 1883 > > neura.edu.au <http://neura.edu.au> > > Follow @neuraustralia on twitter > <https://twitter.com/neuraustralia>Follow NeuRA on facebook > <https://www.facebook.com/NeuroscienceResearchAustralia>Subscribe to > the NeuRA Magazine <http://www.neura.edu.au/help-research/subscribe> > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
