Hi Francesco
if you upload one of the dicom series that causes the problems we will
take a look. If you can also send us the rawavg.mgz after your successful
recon-all from the .nii that would also help
cheers
Bruce
On Wed, 20 Aug 2014, Francesco
Deleo wrote:
Hi all!
Sorry for my late ans
Hi all!
Sorry for my late answer but I went on holiday and I didn't have access to
my mail.
The background is normal in original dicoms and it is not an avarage of
more than one run.
The problem I reported was solved in all cases converting dicoms to nifti
with dcm2nii and using the oriented volu
can you tar and gzip the dicoms and send them to us? Is there a high
background level in them as well? Is this the average of more than one
run? You should check the mri/orig/00?.mgz volume(s) as well
On Fri, 8 Aug
2014, Francesco Deleo wrote:
-- Forwarded message --
From: Fr
-- Forwarded message --
From: Francesco Deleo
Date: 2014-08-08 18:06 GMT+02:00
Subject: Re: [Freesurfer] mpr2mni305 failed error
To: freesurfer
It is not ok...
It seems to have a contrast problem... I can send a snapshot, or if you
want I can send the rawavg.mgz
Francesco
20
I all!
I have the same problem in about 15% of MRI scans, all made with the same
scanning protocol (T1 MPRAGE in a SIEMENS Avanto 1,5 T) during the
recon-all -all process.
I can't recognize any difference between those scans which work correctly
and those not.
I have never found the same error on
