Re: [Freesurfer] Fwd: Corrections to the segmentation lead to giant defects

2014-01-28 Thread Bruce Fischl
changing amygdala to hippocampus shouldn't change the surfaces at all. If you upload the subject I'll take a look On Tue, 28 Jan 2014, Thomas Fink wrote: Yes, all we did in this case was change amygdala to hippocampus and in other cases white matter to hippocampus or vice versa. Thomas Fink D

Re: [Freesurfer] Fwd: Corrections to the segmentation lead to giant defects

2014-01-28 Thread Thomas Fink
Yes, all we did in this case was change amygdala to hippocampus and in other cases white matter to hippocampus or vice versa. Thomas Fink Doktorand & wiss. Mitarb. Lehrstuhl für Neuropsychologie Mail: thomas.f...@psy.lmu.de Phone: +49(0)89/2180-3123 On Tue, Jan 28, 2014 at 2:32 PM, Bruce Fischl

Re: [Freesurfer] Fwd: Corrections to the segmentation lead to giant defects

2014-01-27 Thread Bruce Fischl
Hi Thomas what format are these in? Can you include extensions in the files you send in the future? thanks Bruce On Mon, 27 Jan 2014, Thomas Fink wrote: Hi Bruce, At the moment we are interested in the volumes and thus we checked and corrected the aseg-file (corrections done as described in