Re: [Freesurfer] Fwd: fMRI and anatomical T1 overlaid

You need to include a registration file with your tksurfer command, something like: tksurfer subjectid rh inflated -reg featdir/reg/freesurfer/register.dat -overlay featdir/rendered_thresh_zstat1.nii.gz Did you check the registration with tkregister2? If not, do so first. You can also load it on

[Freesurfer] Fwd: fMRI and anatomical T1 overlaid

Thanks Doug. After doing reg-feat2anat , I checked the registration and overlaid zstat file: tksurfer subjectid rh inflated -overlay featdir/rendered_thresh_zstat1.nii.gz I have attached an image of tksurfer interface . I'm not quite sure about what blue and red clusters mean. They are suposed t