Re: [Freesurfer] Freesurfer with infarct patients

2017-09-03 Thread miracle ozzoude
WM and >> GM lesions >> like cortical stroke that extended into the WM? >> Should I use the >> same >> procedure? >> >> Best, >> Paul >> >>

Re: [Freesurfer] Freesurfer with infarct patients

2017-09-03 Thread Bruce Fischl
            From: Bruce Fischl             Sent: Sunday, September 3, 2017 11:47 AM             To: Freesurfer support list             Reply To: Freesurfer support list             Subject: Re: [Freesurfer] Freesurfer with infarct patients

Re: [Freesurfer] Freesurfer with infarct patients

2017-09-03 Thread miracle ozzoude
t;> >> Sent from my BlackBerry 10 smartphone. >> Original Message >> From: Bruce Fischl >> Sent: Sunday, September 3, 2017 11:47 AM >> To: Freesurfer support list >> Reply To: Freesurfe

Re: [Freesurfer] Freesurfer with infarct patients

2017-09-03 Thread Bruce Fischl
rom my BlackBerry 10 smartphone.   Original Message   From: Bruce Fischl Sent: Sunday, September 3, 2017 11:47 AM To: Freesurfer support list Reply To: Freesurfer support list Subject: Re: [Freesurfer] Freesurfer with infarct pati

Re: [Freesurfer] Freesurfer with infarct patients

2017-09-03 Thread miracle ozzoude
t; lesions like cortical stroke that extended into the WM? Should I use the >> same procedure? >> >> >> Best, >> Paul >> >> Sent from my BlackBerry 10 smartphone. >> Original Message >> From: Bruce Fischl >> Sent: Sunday, September 3,

Re: [Freesurfer] Freesurfer with infarct patients

2017-09-03 Thread Bruce Fischl
Paul Sent from my BlackBerry 10 smartphone.   Original Message   From: Bruce Fischl Sent: Sunday, September 3, 2017 11:47 AM To: Freesurfer support list Reply To: Freesurfer support list Subject: Re: [Freesurfer] Freesurfer with infarct patients Hi Paul if they are WM lesions I think you should ed

Re: [Freesurfer] Freesurfer with infarct patients

2017-09-03 Thread miracle ozzoude
nto the WM? Should I use the same procedure?  Best,  Paul Sent from my BlackBerry 10 smartphone.   Original Message   From: Bruce Fischl Sent: Sunday, September 3, 2017 11:47 AM To: Freesurfer support list Reply To: Freesurfer support list Subject: Re: [Freesurfer] Freesurfer with infarct patients H

Re: [Freesurfer] Freesurfer with infarct patients

2017-09-03 Thread Bruce Fischl
Hi Paul if they are WM lesions I think you should edit the aseg and label them as such, then run from there forward. It should propagate the lesions from aseg to wm.mgz, so you shouldn't have to do both Bruce On Sun, 3 Sep 2017, miracle ozzoude wrote: Hello Bruce,  I am interested in this

Re: [Freesurfer] Freesurfer with infarct patients

2017-09-03 Thread miracle ozzoude
Hello Bruce, I am interested in this thread because I have encountered similar problems with my stroke patients. How do I solve it? Should I only edit the aseg and assign a label called "Lesion" in the FS LookUpTable? or Should I edit both the wm.mgz and aseg.mgz files? If the former, How do I ach

Re: [Freesurfer] Freesurfer with infarct patients

2017-06-21 Thread Bruce Fischl
Hi Mariana yes, control points would mess everything up. It looks like the rest of the surface was generated pretty accurately though - do you need to correct anything? cheers Bruce On Wed, 21 Jun 2017, Budge, Mariana wrote: Hi Freesurfer experts,   I am running FS on a patient with a