Hi Mariana

yes, control points would mess everything up. It looks like the rest of the surface was generated pretty accurately though - do you need to correct anything?

cheers
Bruce

On Wed, 21 Jun 2017, Budge, Mariana wrote:


Hi Freesurfer experts,

 

I am running FS on a patient with a chronic right occipital lobe infarct as
part of a larger study. The program does not recognize the area around the
lesion as brain matter, and I am wondering how best to treat this situation.
I am worried that adding Control Points will incorrectly label the region as
white matter. I am attaching some pictures of slices where this is apparent.
Thank you so much for your help!


Best,

Mariana  


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